View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0673_high_13 (Length: 382)
Name: NF0673_high_13
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 30 - 357
Target Start/End: Complemental strand, 29215651 - 29215323
Alignment:
| Q |
30 |
gattttggccaccaaatttgaattgctcaattttttaacccttcaagtttacaccattttgtatttgctagttcccattaacattttaaataaaaaacat |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29215651 |
gattttggccaccaaatttgaattgctcaatttt--aacccttcaagtttacaccattttgtatttgctagttcccattaacattttaaataaaaaacat |
29215554 |
T |
|
| Q |
130 |
tgacgtgatatttcaattacaagtgtttgattctacgctcatgcattaacgagagctcctattctcaacagctatttgataaagtgtatcaaccatgatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29215553 |
tgacgtgatatttcaattacaagtgtttgattctacgatcatgcattaacgagagctcctattctcaacagctatttgataaagtgtatcaaccatggtt |
29215454 |
T |
|
| Q |
230 |
aaatactaattcacatgtgctaagtatatgcgtattattacacatgtgttcgaaatgtttattttgcaatgcactttcatgtaggccttaataaacgcaa |
329 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29215453 |
aagtactaattcacatgtgctaagtatatgcgtattattacacatgtgttcgaaatgtttattttgcaatgcactttcatgtaggccttaataaacgcaa |
29215354 |
T |
|
| Q |
330 |
tg---caagagcgtcgacaagtattcttagt |
357 |
Q |
| |
|
|| |||||||||||||||||||||||||| |
|
|
| T |
29215353 |
tgcaacaagagcgtcgacaagtattcttagt |
29215323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1401 times since January 2019
Visitors: 4416