View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_high_15 (Length: 369)
Name: NF0673_high_15
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 30 - 362
Target Start/End: Complemental strand, 46538581 - 46538249
Alignment:
| Q |
30 |
taaatcacactactgagctgcgtcgacaaacattgccatctgcagaggatgaaaacgcctctaattggaatgacatgtgcacatttaatggaaaatagtg |
129 |
Q |
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| T |
46538581 |
taaatcacactactgagctgcgtcgacaaacattggcatctgcagaggatgaaaacgcctctaattggaatgacatgtgcacatttaatggaaaatagtg |
46538482 |
T |
|
| Q |
130 |
aatgagatagtgatcaacaaagagacaacagatctatataaaaatactatccaatccggtccaataggtaacagtacaaaaatccaaacaaaggaaaatc |
229 |
Q |
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| T |
46538481 |
aatgagatagtgatcaacaaagagacaacagatctatataaaaatactatccaatccagtccaataggtaacagtacaaaaatccaaacaaaggaaaatc |
46538382 |
T |
|
| Q |
230 |
aagaatgtaactcatcaatacacttatgttcaaacagtgatgaagtagcataaacttcaaaccatacatacaagtacaacaaacacaataataaataaac |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46538381 |
aagaatgtaactcatcaatacacttatgttcaaacagtgatgaagtagcataaacttcaaaccatacatacaagtacaacaaacacaataataaataaac |
46538282 |
T |
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| Q |
330 |
catataccattaatagatgctcccttcatctca |
362 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
46538281 |
catataccattaatagatgctccctccatctca |
46538249 |
T |
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