View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_high_18 (Length: 346)
Name: NF0673_high_18
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_high_18 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 34461789 - 34461553
Alignment:
| Q |
19 |
agcataggacaagacatcttgtggtgtgcaaatgaggatgcttacttggttgaaaaacctaatggacaatgtgtgacagaaaaatgagaataagaatata |
118 |
Q |
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| T |
34461789 |
agcataggacaagacatcttgtggtgtgcaaatgaggatgcttacttggttgaaaaacctaatggacaatgtgtgacagaaaaatgagaataagaatata |
34461690 |
T |
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| Q |
119 |
gttaggagtgtgacatattttagggctaccataaattcactatgagctccataaatggaatcattgagaggcttcttcacactgtatgtgctgcttatca |
218 |
Q |
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| T |
34461689 |
gttaggagtgtgacatattttagggctaccataaattcactatgagctccataaatggaatcattgagaggcttcttcacactgtatgtgctgcttatca |
34461590 |
T |
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| Q |
219 |
ctgctgctaaaccagctgagagaagaatggatgtagt |
255 |
Q |
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| T |
34461589 |
ctgctgccaaaccagctgagagaagaatggatgtagt |
34461553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 1149722 - 1149848
Alignment:
| Q |
101 |
aatgagaataagaatatagttaggagtgtgacatattttagggctaccataaattcactatgagctccataaatggaatcattgagaggcttcttcacac |
200 |
Q |
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| T |
1149722 |
aatgagaagaggaaaattgtgaggagtgagacatattttagtgcaaccatgaattcaccatgtgctccataaattgcatcatttagtggctttttcacac |
1149821 |
T |
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| Q |
201 |
tgtatgtgctgcttatcactgctgcta |
227 |
Q |
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| T |
1149822 |
tatatgtgctgcttataactgctgcta |
1149848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 33 - 156
Target Start/End: Complemental strand, 21761 - 21638
Alignment:
| Q |
33 |
catcttgtggtgtgcaaatgaggatgcttacttggttgaaaaacctaatggacaatgtgtgacagaaaaatgagaataagaatatagttaggagtgtgac |
132 |
Q |
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||||||||||||||||||| |||| ||||| |||||||| ||||||||| || | ||||| ||||||||||||||||||||||| || || ||||| || |
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| T |
21761 |
catcttgtggtgtgcaaataaggaggcttaattggttgagaaacctaattgaaagagtgtggcagaaaaatgagaataagaatatggtaagaagtgtcac |
21662 |
T |
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| Q |
133 |
atattttagggctaccataaattc |
156 |
Q |
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| T |
21661 |
atattttagggcttccataaattc |
21638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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