View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_high_31 (Length: 294)
Name: NF0673_high_31
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 1283177 - 1283319
Alignment:
| Q |
1 |
tggtgatctttacaatgatatgaagcatggacatgcaaataagaacatggatgacgacattgacatctccatacaagtaataatttgaagnnnnnnnnnt |
100 |
Q |
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| T |
1283177 |
tggtgatctttacaatgatatgaagcatggacatataaataaggacatggatgatgacattgacatctccatacaagtaataatttgaa-aaaaaaaaat |
1283275 |
T |
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| Q |
101 |
gaattaattgaatgtaattacatgtatttggtctaataactaca |
144 |
Q |
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| T |
1283276 |
gaattaattgaatgtaattacatgtgtttggtctaataactaca |
1283319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 1283365 - 1283438
Alignment:
| Q |
122 |
atgtatttggtctaataactacacatataggacactgaacacgtctttgatcagaagtgtcggtgctacaaagttaca |
199 |
Q |
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| T |
1283365 |
atgtgtttggtctaataactacacat----gatactgaacatgtctttgatcagaagtgtcggtactacaaagttaca |
1283438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 1502633 - 1502673
Alignment:
| Q |
151 |
ggacactgaacacgtctttgatcagaagtgtcggtgctaca |
191 |
Q |
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| T |
1502633 |
ggacacagaacacgtcttctatcagaagtgtcggtgctaca |
1502673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 14010734 - 14010774
Alignment:
| Q |
154 |
cactgaacacgtctttgatcagaagtgtcggtgctacaaag |
194 |
Q |
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| T |
14010734 |
cactgaacacatctttgatcagaagtgtcggtgctacaaag |
14010774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 7894765 - 7894799
Alignment:
| Q |
160 |
acacgtctttgatcagaagtgtcggtgctacaaag |
194 |
Q |
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| T |
7894765 |
acacgtctttcatcagaagtgtcggtgctacaaag |
7894799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 191
Target Start/End: Original strand, 41427737 - 41427767
Alignment:
| Q |
161 |
cacgtctttgatcagaagtgtcggtgctaca |
191 |
Q |
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| T |
41427737 |
cacgtctttgatcagaagtgtcggtgctaca |
41427767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 4785052 - 4785086
Alignment:
| Q |
160 |
acacgtctttgatcagaagtgtcggtgctacaaag |
194 |
Q |
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| T |
4785052 |
acacgtcttcgatcagaagtgtcggtgctacaaag |
4785086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 30600623 - 30600664
Alignment:
| Q |
155 |
actgaacacgtctttgatcagaagtgtcggtgctacaaagtt |
196 |
Q |
| |
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| T |
30600623 |
actgaacacgcctttgataagaagtgtcagtgctacaaagtt |
30600664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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