View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_high_33 (Length: 287)
Name: NF0673_high_33
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_high_33 |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 135 - 264
Target Start/End: Original strand, 7247255 - 7247384
Alignment:
| Q |
135 |
ctgcacctgcctttgttgttgctgctgctgcccttgtctctgacatcttttacagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgca |
234 |
Q |
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| T |
7247255 |
ctgcacctgcctttgttgttgctgctgctgcccttgtctctgacatcttttacacaaattcataaactaatgtacaaagaaaaaattaaatgcaaatgca |
7247354 |
T |
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| Q |
235 |
tgttagtccatgcacctttggttttgctgt |
264 |
Q |
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| T |
7247355 |
tgttagtccatgcacctttggttttgctgt |
7247384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 255
Target Start/End: Complemental strand, 25321474 - 25321379
Alignment:
| Q |
160 |
tgctgcccttgtctctgacatcttttacagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttgg |
255 |
Q |
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| T |
25321474 |
tgctgcctttgtctctaacatcttttacaaaaattcactaataaatgtacaaataaaaactaaatttcaaatgcatgttggtccattcacctttgg |
25321379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 51742406 - 51742530
Alignment:
| Q |
1 |
gcgaatctccccgacctcatctgcggcgattgcaaaaacggcttcgttgaatcaatccccacaccttctcgctctcgttcaccttcttcctcctccgatg |
100 |
Q |
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| T |
51742406 |
gcgaatctccccgacctcatctgcggcgattgcaaaaacggcttcgttgaatcaatccccacaccttctcgctctcgttcaccttcttcctcctccgatg |
51742505 |
T |
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| Q |
101 |
atcccaatttcggttcacaggttct |
125 |
Q |
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| T |
51742506 |
atcccaatttcggttcacagtttct |
51742530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 1864231 - 1864108
Alignment:
| Q |
2 |
cgaatctccccgacctcatctgcggcgattgcaaaaacggcttcgttgaatcaatccccacaccttctcgctctcgttcaccttcttcctcctccgatga |
101 |
Q |
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| T |
1864231 |
cgaatctccccgacctcatctgcagcgattgcaaaaacggcttcgttgaatcaatccccacaccttctcactcccgctccccttcttcctcttccgatga |
1864132 |
T |
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| Q |
102 |
tcccaatttcggttcacaggttct |
125 |
Q |
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| T |
1864131 |
tttcaattttggttcacagtttct |
1864108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 30438552 - 30438498
Alignment:
| Q |
2 |
cgaatctccccgacctcatctgcggcgattgcaaaaacggcttcgttgaatcaat |
56 |
Q |
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| T |
30438552 |
cgaatctccccgacctcatcagcggcgatcgcaaaaacggcttcgtcgaatcaat |
30438498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 255
Target Start/End: Original strand, 18409 - 18505
Alignment:
| Q |
160 |
tgctgcccttgtctctgacatctttt-acagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttgg |
255 |
Q |
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||||||| ||||| |||||||||||| ||| ||||||| || |||||||||||||||| | || |||||||||||||| |||||| ||||||||| |
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| T |
18409 |
tgctgcctttgtcactgacatctttttacaaaaattcacaaggaaatgtacaaagaaaaactaaatttcaaatgcatgttggtccattcacctttgg |
18505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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