View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0673_high_35 (Length: 275)

Name: NF0673_high_35
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0673_high_35
NF0673_high_35
[»] chr6 (6 HSPs)
chr6 (48-241)||(25784141-25784334)
chr6 (48-184)||(15695607-15695743)
chr6 (48-241)||(19968273-19968457)
chr6 (48-241)||(25616872-25617055)
chr6 (48-183)||(15848880-15849015)
chr6 (65-184)||(22238748-22238867)
[»] chr8 (4 HSPs)
chr8 (48-241)||(23881845-23882038)
chr8 (48-241)||(19361676-19361869)
chr8 (62-184)||(23634463-23634585)
chr8 (48-184)||(23906373-23906509)
[»] chr7 (3 HSPs)
chr7 (52-213)||(23294825-23294986)
chr7 (48-184)||(11926313-11926449)
chr7 (65-177)||(23463163-23463275)
[»] scaffold0410 (1 HSPs)
scaffold0410 (48-238)||(12964-13154)
[»] chr3 (9 HSPs)
chr3 (48-202)||(1209859-1210013)
chr3 (48-184)||(15949183-15949319)
chr3 (48-184)||(55502342-55502478)
chr3 (62-184)||(11942354-11942476)
chr3 (48-184)||(10552412-10552548)
chr3 (48-184)||(11860189-11860325)
chr3 (48-241)||(13053562-13053746)
chr3 (62-184)||(15562103-15562225)
chr3 (62-138)||(37937394-37937470)
[»] scaffold0841 (1 HSPs)
scaffold0841 (59-241)||(1294-1467)
[»] chr2 (5 HSPs)
chr2 (48-241)||(23631726-23631910)
chr2 (48-184)||(21028348-21028484)
chr2 (48-184)||(22660017-22660153)
chr2 (65-172)||(17585354-17585461)
chr2 (69-120)||(24021521-24021572)
[»] scaffold0686 (1 HSPs)
scaffold0686 (48-241)||(3219-3403)
[»] scaffold0127 (1 HSPs)
scaffold0127 (48-184)||(4897-5034)
[»] chr4 (2 HSPs)
chr4 (48-184)||(10645341-10645477)
chr4 (164-240)||(18244323-18244399)
[»] chr1 (3 HSPs)
chr1 (62-184)||(17099760-17099882)
chr1 (69-142)||(26195395-26195468)
chr1 (65-137)||(20401808-20401880)
[»] scaffold0035 (1 HSPs)
scaffold0035 (69-120)||(32801-32852)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 25784141 - 25784334
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||| ||  ||||||||||||||||||||    
T  25784141 tcatcatttcaataaactttttaaattgctcatctagcttagaattggcaaacctttgtgggaaaggaatcttcgattataaaggaggtggtgtagtttc 25784240  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcctcaacttgtggcttgctagtctctttctcgatttcattgggtttggctcttcctatg 241  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||    
T  25784241 ctcaccttgtggttttcctctttctaccctagtttcctcaacttgtggctcgctaatctctttctcaatttcattgggtttggctcttcctatg 25784334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 15695743 - 15695607
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  || ||||||||||||||||||||||||||||| |||||||||||||||||  |||| ||||| |||||||| |||||||| ||  ||||    
T  15695743 tcatcatttctatgaactttttaaattgctcatctagcttagatttggcaaacctttgtggaaaagggatttttggtttaaagggaggtggggtgttttc 15695644  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcc 184  Q
    |||| || ||| || |||||||||| |||||||||||    
T  15695643 ctcaactcgtggttcttctctttctgccctagtttcc 15695607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 19968273 - 19968457
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  ||||| || || |||||| |||||||||||||||| ||||||||||| ||| |||| ||||| ||||| || |||||||| || |||||    
T  19968273 tcatcatttcaataaatttcttgaattgcccatctagcttagacttagcaaacctttgcgggaaagggatttttggtttgaacggaggtggggtggtttc 19968372  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcctcaacttgtggcttgctagtctctttctcgatttcattgggtttggctcttcctatg 241  Q
    ||||||          |||||||||| ||||| ||||| |||| |||||| |||| ||||||||||  ||||||||||||| ||||||||||||    
T  19968373 ctcacc---------atctctttctaacctagcttccttaactcgtggctcgctaatctctttctcactttcattgggtttcgctcttcctatg 19968457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 25617055 - 25616872
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  ||||| || || || ||| |||||| ||||||||| |||||||||||| || ||||  |||| ||||| || |||||||| ||||| ||    
T  25617055 tcatcatttcaataaatttcttgaactgcccatctaacttagacttagcaaacctttgtaggaaaggggtttt-ggtttgaacggaggtggggtagtgtc 25616957  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcctcaacttgtggcttgctagtctctttctcgatttcattgggtttggctcttcctatg 241  Q
    |||||| |         ||||||||||||||| ||||| ||||||||||||||||  |||||||||  ||||||||||||||||||||||||||    
T  25616956 ctcaccat---------ctctttctaccctagcttccttaacttgtggcttgctaacctctttctcactttcattgggtttggctcttcctatg 25616872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 15848880 - 15849015
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  || |||||||| ||||||||||||||||| || |||| ||||||||||||  |  | |||||||||||||| ||||| |||||  ||||    
T  15848880 tcatcatttctatgaactttttgaattgctcatctagctttgatttggaaaacctttgtggaaagcggattttcggtttaaagggaggcggtgtgttttc 15848979  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttc 183  Q
    |||| || ||| || |||||||||| |||| |||||    
T  15848980 ctcaactcgtggttcttctctttctgccctggtttc 15849015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 184
Target Start/End: Complemental strand, 22238867 - 22238748
Alignment:
Q  65 tttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttcctcaccttgtgattttt 164  Q
    ||||| ||||||||||||||||| || |||||||||||||||||| | || ||||| || ||||| || || | |||  |||||||| || ||| ||  |    
T  22238867 tttttgaattgctcatctagctttgatttggcaaacctttgtgggaaggggatttttggcttaaaggggggcgttgtgttttcctcaactcgtggttcct 22238768  T
Q  165 ctctttctaccctagtttcc 184  Q
    |||||||| |||| ||||||    
T  22238767 ctctttcttccctggtttcc 22238748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 23882038 - 23881845
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    ||||||||| |||||| || || |||||| |||||||||||||||| ||||||||||| ||| |||| ||||||||||| ||||||||||| ||||||||    
T  23882038 tcatcatttcgataaatttcttgaattgcccatctagcttagacttagcaaacctttgcgggaaagggattttcggtttgaaaggaggtggagtagtttc 23881939  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcctcaacttgtggcttgctagtctctttctcgatttcattgggtttggctcttcctatg 241  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  23881938 ctcaccatgtgatttttctctttctaccttagtttcctcaacttgcggcttgctaatctctttctcactttcattgggtttggctcttcctatg 23881845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 19361869 - 19361676
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  || ||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||| || ||||| ||||||||||| |||||    
T  19361869 tcatcatttctatgaactttttaaattgctcatctagcttagatttggcaaacctttgtgggaagggaatttttggcttaaagggaggtggtgtggtttc 19361770  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcctcaacttgtggcttgctagtctctttctcgatttcattgggtttggctcttcctatg 241  Q
    |||| ||  || || ||||||||||||||||||||||  ||   |||| | || | ||||||||||  ||||||||| ||||| ||| ||||||    
T  19361769 ctcaactcatggttcttctctttctaccctagtttccctaagcggtggttcgcaaatctctttctcactttcattggatttggttctccctatg 19361676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 23634463 - 23634585
Alignment:
Q  62 aactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttcctcaccttgtgatt 161  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||| || ||||| |||||||||||  |||||||| || ||| ||    
T  23634463 aactttttaaattgctcatctagcttagatttggcaaacctttgtgggaagggaatttttggcttaaagggaggtggtgtgttttcctcaactcgtggtt 23634562  T
Q  162 tttctctttctaccctagtttcc 184  Q
      ||||||||| |||||||||||    
T  23634563 cctctctttctgccctagtttcc 23634585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 23906509 - 23906373
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  || |||||||| ||||||||||||||||| || |||||||||||||||||| | || ||||| |||||||| |||||||||||  ||||    
T  23906509 tcatcatttctatgaactttttgaattgctcatctagctttgatttggcaaacctttgtgggaaggggatttttggtttaaagggaggtggtgtgttttc 23906410  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcc 184  Q
    |||| || ||| || |||||||||| |||| ||||||    
T  23906409 ctcaactcgtggttcttctctttctgccctggtttcc 23906373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 213
Target Start/End: Original strand, 23294825 - 23294986
Alignment:
Q  52 cattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttcctca 151  Q
    ||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| ||||||| || ||||||||||| || || | |||||||| |    
T  23294825 cattttgataaacttcttaaattgctcaactagcttagacttagcaaacctttgtgggaaaggaatctttggtttaaaagggggcggcgaagtttcctta 23294924  T
Q  152 ccttgtgatttttctctttctaccctagtttcctcaacttgtggcttgctagtctctttctc 213  Q
    ||||||| |||||| |||||||||||||||||| |||||||||| | || | ||||||||||    
T  23294925 ccttgtggtttttcgctttctaccctagtttccccaacttgtggttcgcaaatctctttctc 23294986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 11926313 - 11926449
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  || ||||||||||||||||||||||| ||||| |||||||||||||||||| | |||||||| || || |||||||||||||| || ||    
T  11926313 tcatcatttctatgaactttttaaattgctcatctagtttagatttggcaaacctttgtgggaatggaatttttggcttgaaaggaggtggtgtggtctc 11926412  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcc 184  Q
    |||| || ||| || |||||||||| |||||||||||    
T  11926413 ctcagctcgtggttcttctctttcttccctagtttcc 11926449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 177
Target Start/End: Complemental strand, 23463275 - 23463163
Alignment:
Q  65 tttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttcctcaccttgtgattttt 164  Q
    ||||| |||| |||||||||||| || |||||||||||||||||| | || ||||| || ||||| |||||||| ||  |||||||| || ||| ||  |    
T  23463275 tttttgaatttctcatctagctttgatttggcaaacctttgtgggaaggggatttttggcttaaagggaggtggcgtgttttcctcaactcgtggttcct 23463176  T
Q  165 ctctttctaccct 177  Q
    |||||||| ||||    
T  23463175 ctctttctgccct 23463163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0410 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: scaffold0410
Description:

Target: scaffold0410; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 13154 - 12964
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  || ||||||||||||||||||||||||||||| |||||||||||||||||| | ||  |||| || ||||| |||||||||||| ||||    
T  13154 tcatcatttctatgaactttttaaattgctcatctagcttagatttggcaaacctttgtgggaagggggtttttggcttaaagggaggtggtgtactttc 13055  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcctcaacttgtggcttgctagtctctttctcgatttcattgggtttggctcttcct 238  Q
     ||| || ||| |||||||||||||||||||||||||||| |||| |||| |  | ||||||||||  |||||| |||||||| |||||||    
T  13054 atcaactcgtgttttttctctttctaccctagtttcctcagcttgcggctcgtaaatctctttctcactttcatcgggtttggttcttcct 12964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 1209859 - 1210013
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    ||||||||| |||||| || || |||||  |||||||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||||||| ||||||||    
T  1209859 tcatcatttcgataaatttcttgaattgtccatctagcttagacttagcaaacctttgtgggaaagggatttttggtttgaaaggaggtggagtagtttc 1209958  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcctcaacttgtggcttgcta 202  Q
    ||||   |||||||||||||||||||||||||||||||||| | |||||| ||||    
T  1209959 ctcattatgtgatttttctctttctaccctagtttcctcaattggtggctcgcta 1210013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 15949183 - 15949319
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  || ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||| ||||||||||| || ||    
T  15949183 tcatcatttctatgaactttttaaattgctcatctagcttagatttggcaaacctttgtgggaaaggaatttttggcttaaagggaggtggtgtggtctc 15949282  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcc 184  Q
    |||| || ||| || ||||||||||||||| ||||||    
T  15949283 ctcaactcgtggttcttctctttctaccctggtttcc 15949319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 55502478 - 55502342
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  || ||||||||||||||||||||||||||||| |||||||||||||||||  | |||||||| || ||||| ||||||||||| |||||    
T  55502478 tcatcatttctatgaactttttaaattgctcatctagcttagatttggcaaacctttgtggaaagggaatttttggcttaaagggaggtggtgtggtttc 55502379  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcc 184  Q
    |||| || ||| || |||||||||| |||||||||||    
T  55502378 ctcaactcgtggttcttctctttctgccctagtttcc 55502342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 11942476 - 11942354
Alignment:
Q  62 aactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttcctcaccttgtgatt 161  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||| |||||||||||  |||||||| || ||| ||    
T  11942476 aactttttaaattgctcatctagcttagatttggcaaacctttgtgggaagggaattttcggcttaaagggaggtggtgtgttttcctcaactcgtggtt 11942377  T
Q  162 tttctctttctaccctagtttcc 184  Q
      ||||||||| |||||||||||    
T  11942376 cctctctttctgccctagtttcc 11942354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 10552412 - 10552548
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  || ||||||||||||||||||||||||||||| |||||||||||||||||| | | |||||| || ||||| ||||||||||| || ||    
T  10552412 tcatcatttctatgaactttttaaattgctcatctagcttagatttggcaaacctttgtgggaaggaaatttttggcttaaagggaggtggtgtggtctc 10552511  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcc 184  Q
    |||| || ||| || ||||||||||||||| ||||||    
T  10552512 ctcaactcgtggttcttctctttctaccctggtttcc 10552548  T

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Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 11860325 - 11860189
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  || ||||||||||||||||||||||||||||| |||||||||||||| ||| | |||||||| || ||||| |||  |||||| |||||    
T  11860325 tcatcatttctatgaactttttaaattgctcatctagcttagatttggcaaacctttgcgggaagggaatttttggcttaaagggatctggtgtggtttc 11860226  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcc 184  Q
    |||| || ||| || ||||||||||||||||||||||    
T  11860225 ctcaactcgtggttcttctctttctaccctagtttcc 11860189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 13053746 - 13053562
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  ||||| || || |||| | |||||||||||||||| ||||| ||||| ||| |||| ||||| ||||| || |||||||| ||||||||    
T  13053746 tcatcatttcaataaatttgttgaatttcccatctagcttagacttagcaaatctttgcgggaaagggatttttggtttgaacggaggtggggtagtttc 13053647  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcctcaacttgtggcttgctagtctctttctcgatttcattgggtttggctcttcctatg 241  Q
    |||||| |         |  |||||||||||| ||||| ||||||||| |||||| ||||||||||  ||||||||||||||||||||||||||    
T  13053646 ctcaccat---------ccttttctaccctagcttccttaacttgtggattgctaatctctttctcactttcattgggtttggctcttcctatg 13053562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 15562103 - 15562225
Alignment:
Q  62 aactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttcctcaccttgtgatt 161  Q
    |||||||| ||||||||||| ||||| || |||||||||||||||||| | || ||||| || ||||| |||||||||||  |||||||| || ||| ||    
T  15562103 aactttttgaattgctcatcgagctttgatttggcaaacctttgtgggaaggggatttttggcttaaagggaggtggtgtgttttcctcaactcgtggtt 15562202  T
Q  162 tttctctttctaccctagtttcc 184  Q
      ||||||||| |||| ||||||    
T  15562203 cctctctttctgccctggtttcc 15562225  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 37937470 - 37937394
Alignment:
Q  62 aactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtgg 138  Q
    |||||||| ||||||||||||||||| || |||||||||||||| ||| | || ||||| || ||||| ||||||||    
T  37937470 aactttttgaattgctcatctagctttgatttggcaaacctttgagggaaggggatttttggcttaaagggaggtgg 37937394  T

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Target: scaffold0841 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 241
Target Start/End: Original strand, 1294 - 1467
Alignment:
Q  59 ataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttcctcaccttgtg 158  Q
    ||||| ||||| |||||| |||||||||||||||| ||||||||||||||| |||| ||||| ||||| || |||||||| ||||||||||||||         
T  1294 ataaattttttgaattgcccatctagcttagacttagcaaacctttgtgggaaagggatttttggtttgaacggaggtggggtagtttcctcacc----- 1388  T
Q  159 atttttctctttctaccctagtttcctcaacttgtggcttgctagtctctttctcgatttcattgggtttggctcttcctatg 241  Q
         |||||||||||||||| ||||| ||||| |||||||||| ||||||||||  |||||||||| || ||||||||||||    
T  1389 ----atctctttctaccctagcttccttaacttatggcttgctaatctctttctcactttcattggggttagctcttcctatg 1467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 23631910 - 23631726
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    ||||||||| |||||  || || |||||| ||||||| |||||||| ||||||||||| ||| |||  ||||| ||||| || |||||||| || |||||    
T  23631910 tcatcatttcgataattttcttgaattgcccatctagtttagacttagcaaacctttgcgggaaagagatttttggtttgaatggaggtggggtcgtttc 23631811  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcctcaacttgtggcttgctagtctctttctcgatttcattgggtttggctcttcctatg 241  Q
    |||||| |         |||||||||||| |||||||||||||||||||| || | ||||||||||  ||||||||||||||||||||||||||    
T  23631810 ctcaccat---------ctctttctacccaagtttcctcaacttgtggctcgcaaatctctttctcactttcattgggtttggctcttcctatg 23631726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 21028484 - 21028348
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  || |||||||| ||||||||||||||||| || |||||||||||||||||| | |||||||| || ||||| |||||||||||  ||||    
T  21028484 tcatcatttctatgaactttttgaattgctcatctagctttgatttggcaaacctttgtgggaagggaatttttggcttaaagggaggtggtgtgttttc 21028385  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcc 184  Q
    |||| || ||| || |||||||||| |||| ||||||    
T  21028384 ctcaactcgtggttcttctctttctgccctggtttcc 21028348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 22660153 - 22660017
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  || |||||||| ||||||||||||||||| || |||||||||||||||||| | || ||||| |||||||| |||||||||||  |||     
T  22660153 tcatcatttctatgaactttttgaattgctcatctagctttgatttggcaaacctttgtgggaaggggatttttggtttaaagggaggtggtgtgttttt 22660054  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcc 184  Q
    |||| || ||| || |||||||||| |||| ||||||    
T  22660053 ctcaactcgtggttcttctctttctgccctggtttcc 22660017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 17585461 - 17585354
Alignment:
Q  65 tttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttcctcaccttgtgattttt 164  Q
    ||||| ||||||||||||||||| || |||||||||||||| ||| | || ||||| || ||||| |||||||| ||  |||||||| || ||| ||  |    
T  17585461 tttttgaattgctcatctagctttgatttggcaaacctttgagggaaggggatttttggcttaaagggaggtggcgtgttttcctcaactcgtggttcct 17585362  T
Q  165 ctctttct 172  Q
    ||||||||    
T  17585361 ctctttct 17585354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 24021521 - 24021572
Alignment:
Q  69 taaattgctcatctagcttagacttggcaaacctttgtggggaaggaatttt 120  Q
    ||||||||||||||| ||||||||| ||||||||||||||| || |||||||    
T  24021521 taaattgctcatctaacttagacttagcaaacctttgtgggaaatgaatttt 24021572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 3403 - 3219
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  ||||| || || |||||| |||||||| ||||||| |||||||||||  || |||| |||||  |||| || |||||||| ||||||||    
T  3403 tcatcatttcaataaatttcttgaattgcccatctagcatagacttagcaaacctttgcaggaaagggattttttgtttgaacggaggtggggtagtttc 3304  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcctcaacttgtggcttgctagtctctttctcgatttcattgggtttggctcttcctatg 241  Q
    |||||         | |||||||||||||||| ||||| ||||||||||| |||| ||||||||||   |||||||||||||| ||||||||||    
T  3303 ctcac---------tatctctttctaccctagcttccttaacttgtggctcgctaatctctttctcaccttcattgggtttggttcttcctatg 3219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 4897 - 5034
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaa-ttttcggtttaaaaggaggtggtgtagttt 146  Q
    |||||||||  || |||||||| ||||||||||||||||| || |||||||||||||||||| | | || |||| || ||||| |||||||||||  |||    
T  4897 tcatcatttctatgaactttttgaattgctcatctagctttgatttggcaaacctttgtgggaaggtaattttttggcttaaagggaggtggtgtgtttt 4996  T
Q  147 cctcaccttgtgatttttctctttctaccctagtttcc 184  Q
    ||||| || ||| || ||||||||||||||| ||||||    
T  4997 cctcaactcgtggttcttctctttctaccctggtttcc 5034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 10645477 - 10645341
Alignment:
Q  48 tcatcattttgataaactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttc 147  Q
    |||||||||  || ||||||||||||||||||||||||||||| ||| ||||||||| |||| | |||||||| || ||||| |||||||| ||  ||||    
T  10645477 tcatcatttctatgaactttttaaattgctcatctagcttagatttgacaaacctttatgggaagggaatttttggcttaaagggaggtggggtgttttc 10645378  T
Q  148 ctcaccttgtgatttttctctttctaccctagtttcc 184  Q
    |||  || ||| || |||||||||| |||| ||||||    
T  10645377 ctcgactcgtggttcttctctttctgccctggtttcc 10645341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 18244399 - 18244323
Alignment:
Q  164 tctctttctaccctagtttcctcaacttgtggcttgctagtctctttctcgatttcattgggtttggctcttcctat 240  Q
    |||||||||||||||| ||||| ||||||||||||||||  || ||||||  ||| |||||| ||||||||||||||    
T  18244399 tctctttctaccctagcttccttaacttgtggcttgctaacctttttctcactttaattggggttggctcttcctat 18244323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 17099760 - 17099882
Alignment:
Q  62 aactttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgtagtttcctcaccttgtgatt 161  Q
    |||||||| ||||||||||| ||||| || |||||||||||||||||| | || ||||| || ||||| |||||||| ||  |||||||| || ||| ||    
T  17099760 aactttttgaattgctcatcgagctttgatttggcaaacctttgtgggaaggggatttttggcttaaagggaggtggcgtgttttcctcaactcgtggtt 17099859  T
Q  162 tttctctttctaccctagtttcc 184  Q
      ||||||||| |||| ||||||    
T  17099860 cctctctttctgccctggtttcc 17099882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 26195468 - 26195395
Alignment:
Q  69 taaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtggtgta 142  Q
    ||||||||||||||| ||||||||||||||||||||| | | ||| |||||| || ||| |||| |||||||||    
T  26195468 taaattgctcatctaacttagacttggcaaacctttgcgagaaagaaatttttggcttataagggggtggtgta 26195395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 20401880 - 20401808
Alignment:
Q  65 tttttaaattgctcatctagcttagacttggcaaacctttgtggggaaggaattttcggtttaaaaggaggtg 137  Q
    ||||| |||||||||||||| || || |||||||||||||||||| | |||||||| || ||||| |||||||    
T  20401880 tttttgaattgctcatctagttttgatttggcaaacctttgtgggaagggaatttttggcttaaagggaggtg 20401808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 32801 - 32852
Alignment:
Q  69 taaattgctcatctagcttagacttggcaaacctttgtggggaaggaatttt 120  Q
    ||||||||||||||| |||||||||  ||||||||| |||| ||||||||||    
T  32801 taaattgctcatctaacttagacttaacaaacctttatgggaaaggaatttt 32852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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