View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_high_4 (Length: 443)
Name: NF0673_high_4
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 29 - 431
Target Start/End: Complemental strand, 19012117 - 19011715
Alignment:
| Q |
29 |
agctttaaccccttcaaattccttatagatatcacaaccttttactttgttaggttctggcacattcttatctttttcaggattgtcacctggttgaact |
128 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19012117 |
agctttaaccccttcaaatttcttatagatgtcacaaccttttactttgttaggttctggcacattcttatctttttcaggattgtcacttggttgaact |
19012018 |
T |
|
| Q |
129 |
tcatttgcattctgtgcacaaaagtgagaataaaaatgtaaaacattgtccctnnnnnnntgtaaaacattgaataagagaacnnnnnnnnnnnnnnnnn |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
19012017 |
ccatttgcattctgtgcacaaaagtgagaataaaaatgtaaaacattgtccgtaaaaaaatgtaaaacattgaataagagaactttttatttttagtttt |
19011918 |
T |
|
| Q |
229 |
catcaaaaacatgcaagaacattaaatttgtatatagtttagcctaacctcnnnnnnnccacaagtttcaaaaataatcttgttgacagctccagcggaa |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
19011917 |
catcaaaaacatgcaagaacattaaatttgtatatagtttagcctaacctctttttttccacaagtttcgaaaataatcttgttgacagctccaacggaa |
19011818 |
T |
|
| Q |
329 |
gatgaaccaacttcaactacaaacgattctttttagagaatagaagactggattttaaacaaaataaatacatttgtatatgtaatagacacacatgtat |
428 |
Q |
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||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19011817 |
gatgaaccaacttcaactacaaatgattctttttagagattaaaagactgaattttgcacaaaataaatacatttgtatatgtaatagacacacatgtat |
19011718 |
T |
|
| Q |
429 |
att |
431 |
Q |
| |
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||| |
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|
| T |
19011717 |
att |
19011715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 176
Target Start/End: Complemental strand, 18797401 - 18797258
Alignment:
| Q |
31 |
ctttaaccccttcaaattccttatagatatcacaaccttttactttgttaggttctggcacattcttatctttttcaggattgtcacctggttgaacttc |
130 |
Q |
| |
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|||||||||||| ||||||||| ||||| ||||||||| ||| ||| |||||||||||||| |||||||||||||||| ||||||| |||||||||| |
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| T |
18797401 |
ctttaacccctttaaattccttgtagatgtcacaacctattatttttctaggttctggcacactcttatctttttcagggttgtcacttggttgaactct |
18797302 |
T |
|
| Q |
131 |
atttgcattctgtgcacaaaagtgagaataaaaatgtaaaacattg |
176 |
Q |
| |
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|||||||| |||| |||||| | |||||||||| |||||||||| |
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| T |
18797301 |
atttgcatcctgttcacaaa--tttgaataaaaatataaaacattg |
18797258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 229 - 361
Target Start/End: Complemental strand, 18824385 - 18824253
Alignment:
| Q |
229 |
catcaaaaacatgcaagaacattaaatttgtatatagtttagcctaacctcnnnnnnnccacaagtttcaaaaataatcttgttgacagctccagcggaa |
328 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| ||||||||||||||||||| |||||||||| | | |||||||||||||||||||||| | |
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| T |
18824385 |
catcaaaagtatgcaagtacattaaatttgtgtatagtttagcctaacctctgttttttcacaagtttcgacagtaatcttgttgacagctccagctaca |
18824286 |
T |
|
| Q |
329 |
gatgaaccaacttcaactacaaacgattctttt |
361 |
Q |
| |
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||||||||||||||||||||||| |||| |||| |
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| T |
18824285 |
gatgaaccaacttcaactacaaatgattttttt |
18824253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 232 - 368
Target Start/End: Complemental strand, 18797226 - 18797090
Alignment:
| Q |
232 |
caaaaacatgcaagaacattaaatttgtatatagtttagcctaacctcnnnnnnnccacaagtttcaaaaataatcttgttgacagctccagcggaagat |
331 |
Q |
| |
|
||||| |||||||| ||||||||||| | ||||||||| ||| ||||| ||||||||||| | | |||||||||||| ||||||||| ||||| |
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| T |
18797226 |
caaaagcatgcaagcacattaaatttatgtatagtttatcctgacctctttctctccacaagtttcgacagtaatcttgttgatagctccagctaaagat |
18797127 |
T |
|
| Q |
332 |
gaaccaacttcaactacaaacgattctttttagagaa |
368 |
Q |
| |
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|||||||||||||||||||| |||| |||||| |||| |
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| T |
18797126 |
gaaccaacttcaactacaaatgattttttttatagaa |
18797090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 176
Target Start/End: Complemental strand, 18824557 - 18824414
Alignment:
| Q |
31 |
ctttaaccccttcaaattccttatagatatcacaaccttttactttgttaggttctggcacattcttatctttttcaggattgtcacctggttgaacttc |
130 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| ||||| ||| ||| ||| ||||||||||| ||||||| |||||||| |||| || |||||||||| |
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|
| T |
18824557 |
ctttaacccctttgaattccttatagatgtcataacctattatttttttaagttctggcacactcttatcgttttcagggttgttacttggttgaactct |
18824458 |
T |
|
| Q |
131 |
atttgcattctgtgcacaaaagtgagaataaaaatgtaaaacattg |
176 |
Q |
| |
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|||||||| |||| |||||| || |||||||||| ||||| |||| |
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| T |
18824457 |
atttgcatcctgttcacaaa--tgtgaataaaaatataaaatattg |
18824414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 15623803 - 15623854
Alignment:
| Q |
229 |
catcaaaaacatgcaagaacattaaatttgtatatagttta-gcctaacctc |
279 |
Q |
| |
|
||||||||||||||||||||||||| ||| | ||||||||| |||||||||| |
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|
| T |
15623803 |
catcaaaaacatgcaagaacattaattttatgtatagtttatgcctaacctc |
15623854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 15687817 - 15687857
Alignment:
| Q |
229 |
catcaaaaacatgcaagaacattaaatttgtatatagttta |
269 |
Q |
| |
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|||||||| |||||||||||||||| ||||| ||||||||| |
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| T |
15687817 |
catcaaaatcatgcaagaacattaattttgtgtatagttta |
15687857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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