View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_high_48 (Length: 251)
Name: NF0673_high_48
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_high_48 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 103 - 251
Target Start/End: Original strand, 18206715 - 18206863
Alignment:
| Q |
103 |
ctagatctaagatcaaacacggcacaaaagaaaggtaaagtgaactacctctgagatctgaatgaacacgaacagaaacaaacaggtcaccacgttctct |
202 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18206715 |
ctagatctaagatcaaacacagcacaaaagaaaggtaaagtgaactacctctgagatctgaatgaacacgaacagaaacaaacaggtcaccacgtcttct |
18206814 |
T |
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| Q |
203 |
ttactcacgttttcgactccgactcttctctctcgtccgtttccggctt |
251 |
Q |
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| T |
18206815 |
ttactcacgttctcgactccgactcttctctctcgtccgtttccggctt |
18206863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 103 - 251
Target Start/End: Original strand, 18221711 - 18221859
Alignment:
| Q |
103 |
ctagatctaagatcaaacacggcacaaaagaaaggtaaagtgaactacctctgagatctgaatgaacacgaacagaaacaaacaggtcaccacgttctct |
202 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18221711 |
ctagatctaagatcaaacacagcacaaaagaaaggtaaagtgaactacctctgagatctgaatgaacacgaacagaaacaaacaggtcaccacgtcttct |
18221810 |
T |
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| Q |
203 |
ttactcacgttttcgactccgactcttctctctcgtccgtttccggctt |
251 |
Q |
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| T |
18221811 |
ttactcacgttctcgactccgactcttctctctcgttcgtttccggctt |
18221859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 21400542 - 21400627
Alignment:
| Q |
30 |
acgttttcaagaatcctttttcttcctaaactcaaatccggtctcacaaattcaaaagcagttgacaacagtcctagatctaagat |
115 |
Q |
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| T |
21400542 |
acgttttcaaagatcctttttcttcctaaactcaaatccgggctcacaatttcaaaagcagttgacaacagacctagatctaagat |
21400627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 31356331 - 31356404
Alignment:
| Q |
42 |
atcctttttcttcctaaactcaaatccggtctcacaaattcaaaagcagttgacaacagtcctagatctaagat |
115 |
Q |
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| T |
31356331 |
atcctttttcttcctaaactcaaatccgggctcacaatttcaaaagcagttgacaacagacctagatctaagat |
31356404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 16911278 - 16911347
Alignment:
| Q |
43 |
tcctttttcttcctaaactcaaatccggtctcacaaattcaaaagcagttgacaacagtcctagatctaa |
112 |
Q |
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| T |
16911278 |
tcctttttcgttctagactcaaatccggattcacaatttcaaaaacagttcacaacagacctagatctaa |
16911347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 4505016 - 4505085
Alignment:
| Q |
43 |
tcctttttcttcctaaactcaaatccggtctcacaaattcaaaagcagttgacaacagtcctagatctaa |
112 |
Q |
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||||||||| | ||| |||||||||||| |||||| ||||||| ||||| ||||||| ||||||||||| |
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| T |
4505016 |
tcctttttcgttctagactcaaatccggattcacaatttcaaaaacagttcacaacagacctagatctaa |
4505085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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