View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_high_6 (Length: 435)
Name: NF0673_high_6
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 4607306 - 4607533
Alignment:
| Q |
9 |
caacaatataggagtatcacatggtagtattaattagcattgagtggcaacaaaaccaaccaaatttggagtattccaaagatatccactactagaagtt |
108 |
Q |
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| T |
4607306 |
caacaatataggagtatcacatggtagtattaattagcattgagtggcaacaaaaccaaccaaatttggagtattccaaagatatccactactagaagtt |
4607405 |
T |
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| Q |
109 |
cacctaagaatagaatttaatgctatcatcagttatgctaaaatctcattgactgttcctgctcctccgtttatttctcatctgagactatttcaaaagc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4607406 |
cacctaagaatagaatttaatgctatcatcagttatgctaaaatctcattgactgttcctgctcctccgtttatttctcatctgagactatttcaaaagc |
4607505 |
T |
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| Q |
209 |
cacttttctgttacagattttactatca |
236 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4607506 |
cacttttctgttacagattttactatca |
4607533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 366
Target Start/End: Original strand, 4607632 - 4607663
Alignment:
| Q |
335 |
cattatcaatgaccctattttggattattagt |
366 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4607632 |
cattatcaatgaccctattttggattattagt |
4607663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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