View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_high_64 (Length: 202)
Name: NF0673_high_64
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_high_64 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 21262783 - 21262618
Alignment:
| Q |
15 |
agcatagggagagagttagaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaaactttcttaaactt |
114 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21262783 |
agcatagggagagagttagaaatgaggtaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaactt |
21262684 |
T |
|
| Q |
115 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcgtctattgaggaacaagt |
180 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21262683 |
gtgcatcttattacgagatcgcggtggacttacacatacacgaagggcgtctattgaggaacaagt |
21262618 |
T |
|
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Target: scaffold0097 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 20541 - 20376
Alignment:
| Q |
15 |
agcatagggagagagttagaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaaactttcttaaactt |
114 |
Q |
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||||||| |||| |||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
20541 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
20442 |
T |
|
| Q |
115 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcgtctattgaggaacaagt |
180 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||||||||| || ||||| ||||||||||| |
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|
| T |
20441 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagt |
20376 |
T |
|
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Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 22530404 - 22530239
Alignment:
| Q |
15 |
agcatagggagagagttagaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaaactttcttaaactt |
114 |
Q |
| |
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||||||| |||| |||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
22530404 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
22530305 |
T |
|
| Q |
115 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcgtctattgaggaacaagt |
180 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| || ||||| ||||||||||| |
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| T |
22530304 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagt |
22530239 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 22535089 - 22534924
Alignment:
| Q |
15 |
agcatagggagagagttagaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaaactttcttaaactt |
114 |
Q |
| |
|
||||||| |||| |||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
22535089 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
22534990 |
T |
|
| Q |
115 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcgtctattgaggaacaagt |
180 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| || ||||| ||||||||||| |
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|
| T |
22534989 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagt |
22534924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 25993013 - 25992848
Alignment:
| Q |
15 |
agcatagggagagagttagaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaaactttcttaaactt |
114 |
Q |
| |
|
||||||| |||| |||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
25993013 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
25992914 |
T |
|
| Q |
115 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcgtctattgaggaacaagt |
180 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
25992913 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagt |
25992848 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 33092162 - 33092327
Alignment:
| Q |
15 |
agcatagggagagagttagaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaaactttcttaaactt |
114 |
Q |
| |
|
||||||| |||| |||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
33092162 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
33092261 |
T |
|
| Q |
115 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcgtctattgaggaacaagt |
180 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| || ||||| ||||||||||| |
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|
| T |
33092262 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagt |
33092327 |
T |
|
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Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 20984252 - 20984417
Alignment:
| Q |
15 |
agcatagggagagagttagaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaaactttcttaaactt |
114 |
Q |
| |
|
||||||| |||| |||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
20984252 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
20984351 |
T |
|
| Q |
115 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcgtctattgaggaacaagt |
180 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| || ||||| ||||||||||| |
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|
| T |
20984352 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagt |
20984417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 49367482 - 49367317
Alignment:
| Q |
15 |
agcatagggagagagttagaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaaactttcttaaactt |
114 |
Q |
| |
|
||||||| |||| |||||| || || |||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
49367482 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataatttgtatgagtcccaaagctttcgtaaactt |
49367383 |
T |
|
| Q |
115 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcgtctattgaggaacaagt |
180 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
49367382 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagt |
49367317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 20716703 - 20716538
Alignment:
| Q |
15 |
agcatagggagagagttagaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaaactttcttaaactt |
114 |
Q |
| |
|
||||||| |||| |||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
20716703 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
20716604 |
T |
|
| Q |
115 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcgtctattgaggaacaagt |
180 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
20716603 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagt |
20716538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 13190833 - 13190668
Alignment:
| Q |
15 |
agcatagggagagagttagaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaaactttcttaaactt |
114 |
Q |
| |
|
||||||| |||| |||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
13190833 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
13190734 |
T |
|
| Q |
115 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcgtctattgaggaacaagt |
180 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||| |||| || ||||| ||||||||||| |
|
|
| T |
13190733 |
gtgcaccttattacgagatcacggtgggcttacacatacatgaagagcatctatcgaggaacaagt |
13190668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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