View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0673_low_1 (Length: 630)

Name: NF0673_low_1
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0673_low_1
NF0673_low_1
[»] chr2 (4 HSPs)
chr2 (29-331)||(6593900-6594197)
chr2 (429-616)||(6593683-6593870)
chr2 (385-428)||(5276464-5276507)
chr2 (385-429)||(45139690-45139734)
[»] chr1 (5 HSPs)
chr1 (385-428)||(35616781-35616824)
chr1 (385-428)||(48869768-48869811)
chr1 (385-427)||(51988470-51988512)
chr1 (385-428)||(51987826-51987869)
chr1 (385-427)||(35615767-35615809)
[»] chr8 (6 HSPs)
chr8 (385-429)||(61452-61496)
chr8 (385-429)||(39255758-39255802)
chr8 (387-427)||(44752578-44752618)
chr8 (385-428)||(44751607-44751650)
chr8 (385-427)||(1365829-1365871)
chr8 (387-427)||(39254787-39254827)
[»] chr6 (2 HSPs)
chr6 (387-427)||(9574579-9574619)
chr6 (385-428)||(7532446-7532489)
[»] chr3 (1 HSPs)
chr3 (386-427)||(17227955-17227996)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 29 - 331
Target Start/End: Complemental strand, 6594197 - 6593900
Alignment:
Q  29 agaagtaacaatcaaagcacgtaagacagagtcaaccctctacgtatgcttattgctacatggaatatggaataatattatagttggttttgaagaatca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6594197 agaagtaacaatcaaagcacgtaagacagagtcaaccctctacgtatgcttattgctacatggaatatggaataatattatagttggttttgaagaatca 6594098  T
Q  129 tttccttgataactacttgacctatcatgcaaataggttagttttcgttgtatattatgannnnnnnnnnnnnnnnaaaattaaaatagtgggaaaatga 228  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||                ||||||||||||||||||||||||    
T  6594097 tttccttgataactacttgacctatcatgcgaataggttagttttcgttgtatattatga-----tttttttttttaaaattaaaatagtgggaaaatga 6594003  T
Q  229 ttcacattatcatgtattctgttataggccattatcatataatgaaaatttttgctttaattaaaatagtgggaaaataatatcacatttgtactaaaca 328  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6594002 ttcacattatcatgtattctgttataggtcattatcatataatggaaatttttgctttaattaaaatagtgggaaaataatatcacatttgtactaaaaa 6593903  T

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Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 429 - 616
Target Start/End: Complemental strand, 6593870 - 6593683
Alignment:
Q  429 acccggcttcattcctctttttaatagcaactgaaggactctacatgttgatacaaaagacagtggaaaatgattcttacaaaagttttatgatgaacgc 528  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6593870 acccggcttcattcctctttttaatagcaactgaaggacactacatgttgatacaaaagacagtggaaaatggttcttacaaaagttttatgatgaacgc 6593771  T
Q  529 cgatttaaactttgacatttttcaatatgcagatgacacaattttcaatatggatttaatagttgaaggttagactcttcatgtaata 616  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||    
T  6593770 ggatttaaactttgacatttttcaatatgcagatgacacaattttcaatatggatttaatagtggaaggtgagactcttaatgtaata 6593683  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 385 - 428
Target Start/End: Complemental strand, 5276507 - 5276464
Alignment:
Q  385 ccatggtggaaaagacgtctcctttcccaagttaaatgccacct 428  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||    
T  5276507 ccatggtgggaaagaagtctcctttcccaagttaaatgccacct 5276464  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 45139734 - 45139690
Alignment:
Q  385 ccatggtggaaaagacgtctcctttcccaagttaaatgccaccta 429  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||||    
T  45139734 ccatgatggaaaagaagtctcctttcccaaattaaatgccaccta 45139690  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 385 - 428
Target Start/End: Original strand, 35616781 - 35616824
Alignment:
Q  385 ccatggtggaaaagacgtctcctttcccaagttaaatgccacct 428  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||    
T  35616781 ccatggtgggaaagaagtctcctttcccaagttaaatgccacct 35616824  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 385 - 428
Target Start/End: Complemental strand, 48869811 - 48869768
Alignment:
Q  385 ccatggtggaaaagacgtctcctttcccaagttaaatgccacct 428  Q
    ||||||||||||||| |||||||||||||||||||||| |||||    
T  48869811 ccatggtggaaaagaagtctcctttcccaagttaaatgtcacct 48869768  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 51988470 - 51988512
Alignment:
Q  385 ccatggtggaaaagacgtctcctttcccaagttaaatgccacc 427  Q
    ||||||||||||||| |||||||||||||| ||||||||||||    
T  51988470 ccatggtggaaaagaagtctcctttcccaaattaaatgccacc 51988512  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Complemental strand, 51987869 - 51987826
Alignment:
Q  385 ccatggtggaaaagacgtctcctttcccaagttaaatgccacct 428  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||    
T  51987869 ccatggtgggaaagaagtctcctttcccaaattaaatgccacct 51987826  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 385 - 427
Target Start/End: Complemental strand, 35615809 - 35615767
Alignment:
Q  385 ccatggtggaaaagacgtctcctttcccaagttaaatgccacc 427  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||    
T  35615809 ccatggtgggaaagaagtctccttttccaagttaaatgccacc 35615767  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 61496 - 61452
Alignment:
Q  385 ccatggtggaaaagacgtctcctttcccaagttaaatgccaccta 429  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||||    
T  61496 ccatggtgggaaagaagtctcctttcccaaattaaatgccaccta 61452  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 385 - 429
Target Start/End: Original strand, 39255758 - 39255802
Alignment:
Q  385 ccatggtggaaaagacgtctcctttcccaagttaaatgccaccta 429  Q
    ||||||||| ||||| ||||| |||||||||||||||||||||||    
T  39255758 ccatggtgggaaagaagtctcatttcccaagttaaatgccaccta 39255802  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 427
Target Start/End: Original strand, 44752578 - 44752618
Alignment:
Q  387 atggtggaaaagacgtctcctttcccaagttaaatgccacc 427  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  44752578 atggtgggaaagaagtctcctttcccaagttaaatgccacc 44752618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Complemental strand, 44751650 - 44751607
Alignment:
Q  385 ccatggtggaaaagacgtctcctttcccaagttaaatgccacct 428  Q
    ||||| ||| ||||| ||||||||||||||||||||||||||||    
T  44751650 ccatgatgggaaagaagtctcctttcccaagttaaatgccacct 44751607  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 385 - 427
Target Start/End: Complemental strand, 1365871 - 1365829
Alignment:
Q  385 ccatggtggaaaagacgtctcctttcccaagttaaatgccacc 427  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||    
T  1365871 ccatggtgggaaagaagtctcctttcccaaattaaatgccacc 1365829  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 387 - 427
Target Start/End: Complemental strand, 39254827 - 39254787
Alignment:
Q  387 atggtggaaaagacgtctcctttcccaagttaaatgccacc 427  Q
    ||||||| ||||| |||||||||||||| ||||||||||||    
T  39254827 atggtgggaaagaagtctcctttcccaaattaaatgccacc 39254787  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 427
Target Start/End: Original strand, 9574579 - 9574619
Alignment:
Q  387 atggtggaaaagacgtctcctttcccaagttaaatgccacc 427  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  9574579 atggtgggaaagaagtctcctttcccaagttaaatgccacc 9574619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Original strand, 7532446 - 7532489
Alignment:
Q  385 ccatggtggaaaagacgtctcctttcccaagttaaatgccacct 428  Q
    |||||||| |||||| |||||||||||||| |||||||||||||    
T  7532446 ccatggtgaaaaagaagtctcctttcccaaattaaatgccacct 7532489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 17227955 - 17227996
Alignment:
Q  386 catggtggaaaagacgtctcctttcccaagttaaatgccacc 427  Q
    |||||||| ||||| |||||||||||||| ||||||||||||    
T  17227955 catggtgggaaagaagtctcctttcccaaattaaatgccacc 17227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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