View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0673_low_11 (Length: 456)

Name: NF0673_low_11
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0673_low_11
NF0673_low_11
[»] chr7 (2 HSPs)
chr7 (19-141)||(35345219-35345341)
chr7 (162-214)||(35345051-35345104)
[»] chr6 (2 HSPs)
chr6 (19-141)||(2272280-2272402)
chr6 (162-214)||(2272112-2272165)
[»] chr5 (2 HSPs)
chr5 (19-141)||(39343767-39343889)
chr5 (162-214)||(39343599-39343652)
[»] chr3 (3 HSPs)
chr3 (19-141)||(18202048-18202170)
chr3 (162-227)||(18201849-18201914)
chr3 (168-227)||(18201775-18201834)
[»] chr1 (2 HSPs)
chr1 (19-141)||(4009611-4009733)
chr1 (162-214)||(4009443-4009496)


Alignment Details
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 35345341 - 35345219
Alignment:
Q  19 gtgttcgttgaaagttcagatccgtgatggaggagacgtcagaggagtaaagcggtggagatcgatggagtagaatgacggcggaaactgaactcgacgg 118  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35345341 gtgttcgttaaaagttcagatccgtgatggaggagacgtcggaggagtaaaacggtggagatcgatggagtagaatgacagcggaaactgaactcgacgg 35345242  T
Q  119 agacagaagcgattgagatgacg 141  Q
    |||  |||||||| |||||||||    
T  35345241 agatggaagcgatagagatgacg 35345219  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 35345104 - 35345051
Alignment:
Q  162 gattgagtgtgagatgaaaaatttgggg-ttaggtttagactgattggagaaat 214  Q
    ||||||||| |||||||||| ||||||| ||| |||||||||||||||| ||||    
T  35345104 gattgagtgggagatgaaaattttgggggttaagtttagactgattggaaaaat 35345051  T

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Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 2272402 - 2272280
Alignment:
Q  19 gtgttcgttgaaagttcagatccgtgatggaggagacgtcagaggagtaaagcggtggagatcgatggagtagaatgacggcggaaactgaactcgacgg 118  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2272402 gtgttcgttaaaagttcagatccgtgatggaggagacgtcggaggagtaaaacggtggagatcgatggagtagaatgacagcggaaactgaactcgacgg 2272303  T
Q  119 agacagaagcgattgagatgacg 141  Q
    |||  |||||||| |||||||||    
T  2272302 agatggaagcgatagagatgacg 2272280  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 2272165 - 2272112
Alignment:
Q  162 gattgagtgtgagatgaaaaatttgggg-ttaggtttagactgattggagaaat 214  Q
    ||||||||| |||||||||| ||||||| |||||||||||||||||||| ||||    
T  2272165 gattgagtgggagatgaaaattttgggggttaggtttagactgattggaaaaat 2272112  T

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Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 39343889 - 39343767
Alignment:
Q  19 gtgttcgttgaaagttcagatccgtgatggaggagacgtcagaggagtaaagcggtggagatcgatggagtagaatgacggcggaaactgaactcgacgg 118  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39343889 gtgttcgttaaaagttcagatccgtgatggaggagacgtcggaggagtaaaacggtggagatcgatggagtagaatgacagcggaaactgaactcgacgg 39343790  T
Q  119 agacagaagcgattgagatgacg 141  Q
    |||  |||||||| |||||||||    
T  39343789 agatggaagcgatagagatgacg 39343767  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 39343652 - 39343599
Alignment:
Q  162 gattgagtgtgagatgaaaaatttgggg-ttaggtttagactgattggagaaat 214  Q
    ||||||||| |||||||||| ||||||| |||||||||||||||||||| ||||    
T  39343652 gattgagtgggagatgaaaattttgggggttaggtttagactgattggaaaaat 39343599  T

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Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 18202170 - 18202048
Alignment:
Q  19 gtgttcgttgaaagttcagatccgtgatggaggagacgtcagaggagtaaagcggtggagatcgatggagtagaatgacggcggaaactgaactcgacgg 118  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18202170 gtgttcgttaaaagttcagatccgtgatggaggagacgtcggaggagtaaagcggtggagatcgatggagtagaatgacagcggaaactgaactcgacgg 18202071  T
Q  119 agacagaagcgattgagatgacg 141  Q
    |||  ||||||||  ||||||||    
T  18202070 agatggaagcgataaagatgacg 18202048  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 18201914 - 18201849
Alignment:
Q  162 gattgagtgtgagatgaaaaatttgggg-ttaggtttagactgattggagaaattttgagtgtgaga 227  Q
    ||||||||| |||||||||| ||||||| |||||||||||||||||||| ||| |||||||||||||    
T  18201914 gattgagtgcgagatgaaaattttgggggttaggtttagactgattgga-aaaatttgagtgtgaga 18201849  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 18201834 - 18201775
Alignment:
Q  168 gtgtgagatgaaaaatttgggg-ttaggtttagactgattggagaaattttgagtgtgaga 227  Q
    |||||||||||||| ||||||| |||||||||||||||||||| ||| |||||||||||||    
T  18201834 gtgtgagatgaaaattttgggggttaggtttagactgattgga-aaaatttgagtgtgaga 18201775  T

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Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 4009733 - 4009611
Alignment:
Q  19 gtgttcgttgaaagttcagatccgtgatggaggagacgtcagaggagtaaagcggtggagatcgatggagtagaatgacggcggaaactgaactcgacgg 118  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4009733 gtgttcgttaaaagttcagatccgtgatggaggagacgtcggaggagtaaaacggtggagatcgatggagtagaatgacagcggaaactgaactcgacgg 4009634  T
Q  119 agacagaagcgattgagatgacg 141  Q
    |||  |||||||| |||||||||    
T  4009633 agatggaagcgatagagatgacg 4009611  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 4009496 - 4009443
Alignment:
Q  162 gattgagtgtgagatgaaaaatttgggg-ttaggtttagactgattggagaaat 214  Q
    ||||||||| |||||||||| ||||||| |||||||||||||||||||| ||||    
T  4009496 gattgagtgggagatgaaaattttgggggttaggtttagactgattggaaaaat 4009443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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