View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0673_low_111 (Length: 248)
Name: NF0673_low_111
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_111 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 45989368 - 45989139
Alignment:
| Q |
3 |
ccaaaacgtccacaaaaacaacaacaacgagaactatttcatccaaacacacatcaaatcttcttattccatgatatcaacgatttgttaacctctcctt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45989368 |
ccaaaacgtccacaaaaacaacaacaacgagaactatttcatccaaacacacatcaaatcttcttattccatgatatcaacgatttgttaacctctcctt |
45989269 |
T |
|
| Q |
103 |
tgcaaattcgttttctccaaatttgagtattttttgttcaaataaaaattatttaattcactttaagtgtttaaagttgcagaaaattgtttgtaatcaa |
202 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
45989268 |
tgcaaattcgttttctccaaatttaggtattttttgttcaaataaaaattatttaattcactttgagtgtttaaagttgcagaaaattgtttgtaatcaa |
45989169 |
T |
|
| Q |
203 |
aaggatatgttgttttgtacatgatgatgt |
232 |
Q |
| |
|
|||||||||||||||||| |||||| |||| |
|
|
| T |
45989168 |
aaggatatgttgttttgttcatgattatgt |
45989139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 47031112 - 47030883
Alignment:
| Q |
3 |
ccaaaacgtccacaaaaacaacaacaacgagaactatttcatccaaacacacatcaaatcttcttattccatgatatcaacgatttgttaacctctcctt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47031112 |
ccaaaacgtccacaaaaacaacaacaacgagaactatttcatccaaacacacaccaaatcttcttattccatgatatcaacgatttgttaacctctcctt |
47031013 |
T |
|
| Q |
103 |
tgcaaattcgttttctccaaatttgagtattttttgttcaaataaaaattatttaattcactttaagtgtttaaagttgcagaaaattgtttgtaatcaa |
202 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47031012 |
tgcaaattcgttttcttcaaatttgggtattttttgttcaaataaaaattatttaattcactttaagtgtttaaagttgcagaaaattgtttgtaatcaa |
47030913 |
T |
|
| Q |
203 |
aaggatatgttgttttgtacatgatgatgt |
232 |
Q |
| |
|
|||||||||||||||||| |||||| |||| |
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|
| T |
47030912 |
aaggatatgttgttttgttcatgattatgt |
47030883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 42068698 - 42068469
Alignment:
| Q |
3 |
ccaaaacgtccacaaaaacaacaacaacgagaactatttcatccaaacacacatcaaatcttcttattccatgatatcaacgatttgttaacctctcctt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42068698 |
ccaaaacgtccacaaaaacaacaacaacgagaactatttcatccaaacacacaccaaatcttcttattccatgatatcaacgatttgttaacctctcctt |
42068599 |
T |
|
| Q |
103 |
tgcaaattcgttttctccaaatttgagtattttttgttcaaataaaaattatttaattcactttaagtgtttaaagttgcagaaaattgtttgtaatcaa |
202 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
42068598 |
tgcaaattcgttttctccaaatttgggtattttttgttcaaataaaaattatttaattcactttgaatgtttaaagttgcagaaaattgtttgtaatcaa |
42068499 |
T |
|
| Q |
203 |
aaggatatgttgttttgtacatgatgatgt |
232 |
Q |
| |
|
|||||||||||||||||| |||||| |||| |
|
|
| T |
42068498 |
aaggatatgttgttttgttcatgattatgt |
42068469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 34094533 - 34094750
Alignment:
| Q |
3 |
ccaaaacgtccacaaaaacaacaacaacgagaactatttcatccaaacacacatcaaatcttcttattccatgatatcaacgatttgttaacctctcctt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34094533 |
ccaaaacgtccacaaaaacaacaacaacgagaactatttcatccaaacacacaccaaatcttcttattccatgatatcaacgatttgttaacctctcctt |
34094632 |
T |
|
| Q |
103 |
tgcaaattcgttttctccaaatttgagtattttttgttcaaataaaaattatttaattcactttaagtgtttaaagttgcagaaaattgtttgtaatcaa |
202 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
34094633 |
tgcaaattcgttttctccaaatttgggtattttttgttcaaataaaaattatttaattcactttgagtgtttaaagttgcagaaaattgtttgtaatcaa |
34094732 |
T |
|
| Q |
203 |
aaggatatgttgttttgt |
220 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
34094733 |
aaggatatgttgttttgt |
34094750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 6442991 - 6443221
Alignment:
| Q |
3 |
ccaaaacgtccacaaaaacaacaacaacgagaactatttcatccaaacacacatcaaatcttcttattccatgatatcaacgatttgttaacctctcctt |
102 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6442991 |
ccaaaacgtccacaaaaacaacaacgacgagaactatttcatccaaacacacatcaaatcttcttattccatgatatcaacgatttgttaacctctcctt |
6443090 |
T |
|
| Q |
103 |
tgcaaattcgttttctccaaatttgagtattttttgttcaaat-aaaaattatttaattcactttaagtgtttaaagttgcagaaaattgtttgtaatca |
201 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6443091 |
tgcaaattcgttttctccaaatttgggtattttttgttcaaataaaaaattatttaattcactttgagtgtttaaagttgcagaaaattgtttgtaatca |
6443190 |
T |
|
| Q |
202 |
aaaggatatgttgttttgtacatgatgatgt |
232 |
Q |
| |
|
||||||||||||||||||| |||||| |||| |
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|
| T |
6443191 |
aaaggatatgttgttttgttcatgattatgt |
6443221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 45325285 - 45325055
Alignment:
| Q |
3 |
ccaaaacgtccacaaaaacaacaacaacgagaactatttcatccaaacacacatcaaatcttcttattccatgatatcaacgatttgttaacctctcctt |
102 |
Q |
| |
|
||||||||| || ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45325285 |
ccaaaacgttcataaaaacaacaacagcgagaactatttcatccaaacacacctcaaatcttcttattccatgatatcaacgatttgttaacctctcctt |
45325186 |
T |
|
| Q |
103 |
tgcaaattcgttttctccaaatttgagta-ttttttgttcaaataaaaattatttaattcactttaagtgtttaaagttgcagaaaattgtttgtaatca |
201 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45325185 |
tgcaaattcgttttctccaaatttggatatttttttgttcaaataaaaattatttaattcactttgagtgtttaaagttgcagaaaattgtttgtaatca |
45325086 |
T |
|
| Q |
202 |
aaaggatatgttgttttgtacatgatgatgt |
232 |
Q |
| |
|
||||||||||||||||||| |||||| |||| |
|
|
| T |
45325085 |
aaaggatatgttgttttgttcatgattatgt |
45325055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 29833735 - 29833783
Alignment:
| Q |
168 |
agtgtttaaagttgcagaaaattgtttgtaatcaaaaggatatgttgtt |
216 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
29833735 |
agtgtctaaagttgcagaaaattgtttgaaattaaaaggaaatgttgtt |
29833783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 50233342 - 50233386
Alignment:
| Q |
157 |
aattcactttaagtgtttaaagttgcagaaaattgtttgtaatca |
201 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
50233342 |
aattcactttgagtgtttaaatatgcagaaaattgtttgtaatca |
50233386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 32509424 - 32509352
Alignment:
| Q |
129 |
gtattttttgttcaaataaaaattatttaattcactttaagtgtttaaagttgcagaaaattgtttgtaatcaa |
202 |
Q |
| |
|
|||||||||||| |||| || || |||| |||||||||| ||||||||| |||||||||||| ||| |||||| |
|
|
| T |
32509424 |
gtattttttgtt-aaattgaatttttttatttcactttaaatgtttaaagatgcagaaaattgcttgaaatcaa |
32509352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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