View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_115 (Length: 228)
Name: NF0673_low_115
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_115 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 4407788 - 4408009
Alignment:
| Q |
7 |
ataacttgaaatatgacacagcataacaagattcgagtttggggggttttgggaggtcaaaaatcgaagctgcagaaatcaggaaaagagaccaaatctg |
106 |
Q |
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| T |
4407788 |
ataacttgaaatatgacacagcataacaagattcgagcttggggggttttgggaggtcaaaaatccaagctgcagaaatcacgaaaagagaccaaatctg |
4407887 |
T |
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| Q |
107 |
ccttttatattagaatggtttcagattctataattagaagcaatttgaagcgtgcttttacgtttcaatttatagaatctcaatggaggtattcactgga |
206 |
Q |
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| T |
4407888 |
ccttttatattagaatggtttcagattttataattagaagcaatttgaagcgtgcttttacgtttcaatttatagaatctcaatggaggtattcactgga |
4407987 |
T |
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| Q |
207 |
cacaagatggatgaaagcaaaa |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
4407988 |
cacaagatggatgaaagcaaaa |
4408009 |
T |
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