View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_118 (Length: 228)
Name: NF0673_low_118
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_118 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0201 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 1982246 - 1982019
Alignment:
| Q |
1 |
cttagtgtctaagagtaacaccttttaagaaaccacatgacaacaccacttcaacgccaccgccgaaggcaccaccacacaacacaactatgatgtctct |
100 |
Q |
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| T |
1982246 |
cttagtgtctaagagtaacgccttttaagaaaccacatgacaacaccacttcaacgccaccgccgaaggcaccaccacacaacacaactatgatgtctct |
1982147 |
T |
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| Q |
101 |
gccgcaattgaagtcattgaatccaccattgaagcaactgaatctgctcaaaactcagccaccatcatcgtcgatctctgccctttctctggtgtcgtcc |
200 |
Q |
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| T |
1982146 |
gctgcaattgaagtcattgaatccaccattgaagcaactgaatctgctcaaaactcagccaccatcatcgtcgatctctgccctttctctggtgtcgtcc |
1982047 |
T |
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| Q |
201 |
cctctcccgaaacctgtagatccacaat |
228 |
Q |
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|||||||||||||| ||||||||||||| |
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| T |
1982046 |
cctctcccgaaaccagtagatccacaat |
1982019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 37089594 - 37089542
Alignment:
| Q |
129 |
ttgaagcaactgaatctgctcaaaactcagccaccatcatcgtcgatctctgc |
181 |
Q |
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| T |
37089594 |
ttgaagcgactgaatctgctcaaaactcagccgccaccatcgttaatctctgc |
37089542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 20799 - 20875
Alignment:
| Q |
6 |
tgtctaagagtaacaccttttaagaaaccacatgacaacaccacttcaacgccaccgccgaaggcaccaccacacaa |
82 |
Q |
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|||||| ||||| ||||| ||||| ||||| | ||||||||||||| |||||||| | | ||||||||||||||| |
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| T |
20799 |
tgtctacgagtagcacctcttaagcaaccatacatcaacaccacttcagcgccaccgtccagggcaccaccacacaa |
20875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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