View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_133 (Length: 201)
Name: NF0673_low_133
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_133 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 21262618 - 21262783
Alignment:
| Q |
21 |
acttgttcctcaatagacgcccttcgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaatta |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
21262618 |
acttgttcctcaatagacgcccttcgtgtatgtgtaagtccaccgcgatctcgtaataagatgcacaagtttaagaaagctttgggactcatacgaatta |
21262717 |
T |
|
| Q |
121 |
tatcataacatcgatcacttcctataatatgtttcattagctcatttctaactctctccctatgct |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
21262718 |
tatcataacatcgatcacttcctataatatgtttcattacctcatttctaactctctccctatgct |
21262783 |
T |
|
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Target: scaffold0097 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 20376 - 20541
Alignment:
| Q |
21 |
acttgttcctcaatagacgcccttcgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaatta |
120 |
Q |
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||||||||||| ||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
20376 |
acttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta |
20475 |
T |
|
| Q |
121 |
tatcataacatcgatcacttcctataatatgtttcattagctcatttctaactctctccctatgct |
186 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||| || || |||||| |||| ||||||| |
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|
| T |
20476 |
tatcataacatcggtcactacctattatatgtttcattagttcgttcctaactttctctctatgct |
20541 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 22530239 - 22530404
Alignment:
| Q |
21 |
acttgttcctcaatagacgcccttcgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaatta |
120 |
Q |
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|
||||||||||| ||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
22530239 |
acttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta |
22530338 |
T |
|
| Q |
121 |
tatcataacatcgatcacttcctataatatgtttcattagctcatttctaactctctccctatgct |
186 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||| || || |||||| |||| ||||||| |
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|
| T |
22530339 |
tatcataacatcggtcactacctattatatgtttcattagttcgttcctaactttctctctatgct |
22530404 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 22534924 - 22535089
Alignment:
| Q |
21 |
acttgttcctcaatagacgcccttcgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaatta |
120 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
22534924 |
acttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta |
22535023 |
T |
|
| Q |
121 |
tatcataacatcgatcacttcctataatatgtttcattagctcatttctaactctctccctatgct |
186 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||| || || |||||| |||| ||||||| |
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|
| T |
22535024 |
tatcataacatcggtcactacctattatatgtttcattagttcgttcctaactttctctctatgct |
22535089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 25992848 - 25993013
Alignment:
| Q |
21 |
acttgttcctcaatagacgcccttcgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaatta |
120 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
25992848 |
acttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta |
25992947 |
T |
|
| Q |
121 |
tatcataacatcgatcacttcctataatatgtttcattagctcatttctaactctctccctatgct |
186 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||| || || |||||| |||| ||||||| |
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|
| T |
25992948 |
tatcataacatcggtcactacctattatatgtttcattagttcgttcctaactttctctctatgct |
25993013 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 33092327 - 33092162
Alignment:
| Q |
21 |
acttgttcctcaatagacgcccttcgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaatta |
120 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
33092327 |
acttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta |
33092228 |
T |
|
| Q |
121 |
tatcataacatcgatcacttcctataatatgtttcattagctcatttctaactctctccctatgct |
186 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||| || || |||||| |||| ||||||| |
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|
| T |
33092227 |
tatcataacatcggtcactacctattatatgtttcattagttcgttcctaactttctctctatgct |
33092162 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 20984417 - 20984252
Alignment:
| Q |
21 |
acttgttcctcaatagacgcccttcgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaatta |
120 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
20984417 |
acttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta |
20984318 |
T |
|
| Q |
121 |
tatcataacatcgatcacttcctataatatgtttcattagctcatttctaactctctccctatgct |
186 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||| || || |||||| |||| ||||||| |
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|
| T |
20984317 |
tatcataacatcggtcactacctattatatgtttcattagttcgttcctaactttctctctatgct |
20984252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 49367317 - 49367482
Alignment:
| Q |
21 |
acttgttcctcaatagacgcccttcgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaatta |
120 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |
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|
| T |
49367317 |
acttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacaaatta |
49367416 |
T |
|
| Q |
121 |
tatcataacatcgatcacttcctataatatgtttcattagctcatttctaactctctccctatgct |
186 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||| || || |||||| |||| ||||||| |
|
|
| T |
49367417 |
tatcataacatcggtcactacctattatatgtttcattagttcgttcctaactttctctctatgct |
49367482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 20716538 - 20716703
Alignment:
| Q |
21 |
acttgttcctcaatagacgcccttcgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaatta |
120 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
20716538 |
acttgttcctcgatagatgctcttcgtgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta |
20716637 |
T |
|
| Q |
121 |
tatcataacatcgatcacttcctataatatgtttcattagctcatttctaactctctccctatgct |
186 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||| || || |||||| |||| ||||||| |
|
|
| T |
20716638 |
tatcataacatcggtcactacctattatatgtttcattagttcgttcctaactttctctctatgct |
20716703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 13190668 - 13190833
Alignment:
| Q |
21 |
acttgttcctcaatagacgcccttcgtgtatgtgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaatta |
120 |
Q |
| |
|
||||||||||| ||||| || |||| |||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
13190668 |
acttgttcctcgatagatgctcttcatgtatgtgtaagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta |
13190767 |
T |
|
| Q |
121 |
tatcataacatcgatcacttcctataatatgtttcattagctcatttctaactctctccctatgct |
186 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||| || || |||||| |||| ||||||| |
|
|
| T |
13190768 |
tatcataacatcggtcactacctattatatgtttcattagttcgttcctaactttctctctatgct |
13190833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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