View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_2 (Length: 616)
Name: NF0673_low_2
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 100 - 545
Target Start/End: Original strand, 8316394 - 8316839
Alignment:
| Q |
100 |
gatggacatcatccattaccaagctcgacttagatgatattgatttatcatacaattataatccattgtgttcttattgtgaagaaatttgcactgatta |
199 |
Q |
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| T |
8316394 |
gatggacatcatccatcaccaagctcgacttagatgatattgatttatcatacaattataatccattgtgttcttattgcgaagaaatttgcactgatta |
8316493 |
T |
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| Q |
200 |
ttgctatgactatgataaggttagttttctccctcttgttatcttatttgatagtccaccccaaaacattgatgataaattaagtaactctgatgatttt |
299 |
Q |
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| T |
8316494 |
ttgctatgactatgataaggttagttttctccctcttgttatcttatttgatagtccaccccaaaacattgatgataaattaagtaactctgatgatttt |
8316593 |
T |
|
| Q |
300 |
ggatgcagtataaattgactgtatgtccaaggtgtcatgtttgcggcaatcataaagccaatttgcgcgatgcagaagtatatgaaaggcgtgtggagat |
399 |
Q |
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| T |
8316594 |
ggatgcagtataaattgactgtatgtccaaggtgtcatgtttgcggaaatcataaagccaatttgcgcgatgcagaagtatatgaaaggcgtgtggagat |
8316693 |
T |
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| Q |
400 |
agattttgagagcgggatgaaaatagaatcaggtaaaaaggagcagcagtttgtaaattttgttggcagagcacttctccttacttcaatctcaagcatg |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316694 |
agattttgagagcgggatgaaaatagaatcaggtaaaaaggagcagcagtttgtaaattttgttggcagagcacttctccttacttcaatctcaagcatg |
8316793 |
T |
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| Q |
500 |
gagttggaaagattttctttactgatcaataacaagcgtgatatat |
545 |
Q |
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| T |
8316794 |
gagttggaaagattttctttactgatcaataacaagcgtgatatat |
8316839 |
T |
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