View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_22 (Length: 410)
Name: NF0673_low_22
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_22 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 30 - 410
Target Start/End: Original strand, 24907363 - 24907737
Alignment:
| Q |
30 |
cttttagtatgtctcgaatggcattgtaattttcaaaacagtagcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaa |
129 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24907363 |
cttttagtatgtctcgaatggcgttgtaattttcaaaacagttgcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaa |
24907462 |
T |
|
| Q |
130 |
gttgctctttgaaacgtgggtttagctttcccgccgccaaaccaaacaggtcctttaactgttagctctttgaaacatgggtttggctctttgaaacgtg |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24907463 |
gttgctctttgaaacgtgggtttagctttcccgccgccaaaccaaacaggtcctttcactgttagctctttgaaacatgggtttggctctttgaaacgtg |
24907562 |
T |
|
| Q |
230 |
ttattgctgatcaatgtttttatggaatgtggaaccaataagcaataacagaagtaaatatatgaacatttatttaatgcagtatccaacaacataagaa |
329 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24907563 |
ttattgctgatcaatgtttttatggaatgtggaaccaataagcaataacagaagtaaatatatgaacatttatttaatgcagtatccaacaatataagaa |
24907662 |
T |
|
| Q |
330 |
ataagattcatcataatgaatttaacccatgattccctttggaaccacatgtatcctaacaactaaatgataaatacatca |
410 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
24907663 |
ataagattcatcataatgaat------catgattccctttggaaccacatgtatcctaataactaaacgataaatacatca |
24907737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 237 - 410
Target Start/End: Original strand, 24889863 - 24890036
Alignment:
| Q |
237 |
tgatcaatgtttttatggaatgtggaaccaataagcaataacagaagtaaatatatgaacatttatttaatgcagtatccaacaacataagaaataagat |
336 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| || ||||||||||||||||||| |
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| T |
24889863 |
tgatcaatttttgtatggaaagtggaaccaataagcaataacagaagtaaatatatgaacatttattcaatgtagtaccccacaacataagaaataagat |
24889962 |
T |
|
| Q |
337 |
tcatcataatgaatttaacccatgattccctttggaaccacatgtatcctaacaac-taaatgataaatacatca |
410 |
Q |
| |
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|||||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
24889963 |
tcatcataatatattt-acccattattccctttggaaccacatgtatcctaacaacaaaaaagataaatacatca |
24890036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 178
Target Start/End: Complemental strand, 2212799 - 2212658
Alignment:
| Q |
36 |
gtatgtctcgaatggcattgtaattttcaaaacagtagcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgct |
135 |
Q |
| |
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|||||| | ||||||| ||||| ||||||||| || ||||||||||| ||| |||||||||||||||||| ||||| ||||||| ||||||||||| |
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| T |
2212799 |
gtatgtttagaatggcgttgta-ttttcaaaattgtggcaagaaatcatgttgccgtgaaagctaggaaagctagcttctcaatttccacgaaagttgcc |
2212701 |
T |
|
| Q |
136 |
ctttgaaacgtgggtttagctttcccgccgccaaaccaaacag |
178 |
Q |
| |
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||| || |||||||||| |||||||| |||||||||||||||| |
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| T |
2212700 |
cttcgagacgtgggtttggctttcccaccgccaaaccaaacag |
2212658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 11026769 - 11026889
Alignment:
| Q |
59 |
ttttcaaaacagtagcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagcttt |
158 |
Q |
| |
|
|||||||||| | |||||||||||| ||||||||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
11026769 |
ttttcaaaactgcggcaagaaatcacgttgtcgtgaaagctaggaaagaaagcttctcaatttccacgaaagtcgctctttgaaacgtgggtttggcttt |
11026868 |
T |
|
| Q |
159 |
cccgccgccaaaccaaacagg |
179 |
Q |
| |
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||| | ||||||||||||||| |
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|
| T |
11026869 |
cccactgccaaaccaaacagg |
11026889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 180
Target Start/End: Complemental strand, 24403800 - 24403656
Alignment:
| Q |
36 |
gtatgtctcgaatggcattgtaattttcaaaacagtagcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgct |
135 |
Q |
| |
|
|||||| | ||||| |||| || |||||||||| | |||| ||||||| |||||||||||| |||||||||||| | | |||| || |||||||||| |
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| T |
24403800 |
gtatgtttggaatgacattatatttttcaaaactgcggcaaaaaatcacgttgtcgtgaaagttaggaaagcaagttacttcatttctaggaaagttgct |
24403701 |
T |
|
| Q |
136 |
ctttgaaacgtgggtttagctttcccgccgccaaaccaaacaggt |
180 |
Q |
| |
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|||||||| |||||||| |||||||| ||| |||||||||||||| |
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| T |
24403700 |
ctttgaaatgtgggtttggctttcccaccgtcaaaccaaacaggt |
24403656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 40350454 - 40350558
Alignment:
| Q |
73 |
gcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctttcccgccgccaaacc |
172 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||||| ||||| || |||| || |||| |||||||||||||||||||||| |||||||| | |||||||| |
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| T |
40350454 |
gcaaaaaatcacgttgtcgtgaaagttaggaaagcgagcttctccatttctatgaaaattgctctttgaaacgtgggtttggctttcccactgccaaacc |
40350553 |
T |
|
| Q |
173 |
aaaca |
177 |
Q |
| |
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||||| |
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| T |
40350554 |
aaaca |
40350558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 6217640 - 6217776
Alignment:
| Q |
45 |
gaatggcattgtaattttcaaaacagtagcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaac |
144 |
Q |
| |
|
|||| |||||||| |||||||||| | |||||||| ||| || |||||||||||||||| |||||| | ||||| |||||||||||||||| | || |
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|
| T |
6217640 |
gaatagcattgtatttttcaaaactgcggcaagaaaccacgttaccgtgaaagctaggaaactaagcttcttcattttcacgaaagttgctctttaagac |
6217739 |
T |
|
| Q |
145 |
gtgggtttagctttcccgccgccaaaccaaacaggtc |
181 |
Q |
| |
|
| |||| ||||| || ||||||||||||| ||||| |
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|
| T |
6217740 |
gatagtttggcttttccaccgccaaaccaaagaggtc |
6217776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 14988302 - 14988387
Alignment:
| Q |
94 |
aaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctttcccgccgcc-aaaccaaacag |
178 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||| |||| ||||||||||||||| |||||||| ||||| ||||||||||| |
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| T |
14988302 |
aaagctaggaaagtaagcttttagattttcacgaaagtagctccttgaaacgtgggtttggctttcccaccgccaaaaccaaacag |
14988387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 7561317 - 7561386
Alignment:
| Q |
108 |
aagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctttcccgccgccaaaccaaaca |
177 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||| | ||||| ||||||||||||||| | ||||||||||| |
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|
| T |
7561317 |
aagcttttctattttcacgaaagtagctcttttagacgtgagtttagctttcccgcggtcaaaccaaaca |
7561386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 12768670 - 12768583
Alignment:
| Q |
94 |
aaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctttcccgccgccaaaccaaacaggtc |
181 |
Q |
| |
|
|||||||||||||||||||| || | || ||||||||||||| || || | | ||| |||||||||||||||||||||||||||| |
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|
| T |
12768670 |
aaagctaggaaagcaagcttctctacttccacgaaagttgctccttaaaccacgagttcggctttcccgccgccaaaccaaacaggtc |
12768583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 35154572 - 35154681
Alignment:
| Q |
73 |
gcaagaaatcacattgtcgtgaaagctaggaaagc--aagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctttcccgccgccaaa |
170 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| |||| | || |||| |||||| |||||||||||||||| |||| ||||| || |||||| |
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| T |
35154572 |
gcaagaaatcatgttgccgtgaaagctaggaaagcaaaagcatctccatttccacgaaatttgctctttgaaacgtatgtttggcttttccattgccaaa |
35154671 |
T |
|
| Q |
171 |
ccaaacaggt |
180 |
Q |
| |
|
|||||||||| |
|
|
| T |
35154672 |
ccaaacaggt |
35154681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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