View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0673_low_24 (Length: 392)

Name: NF0673_low_24
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0673_low_24
NF0673_low_24
[»] chr4 (17 HSPs)
chr4 (59-222)||(12230807-12230970)
chr4 (59-178)||(13268018-13268137)
chr4 (287-387)||(12231018-12231118)
chr4 (59-172)||(19727534-19727647)
chr4 (66-178)||(13559361-13559473)
chr4 (59-178)||(18554716-18554830)
chr4 (59-173)||(17419480-17419594)
chr4 (59-180)||(15870940-15871061)
chr4 (59-180)||(15888515-15888636)
chr4 (158-203)||(8808812-8808857)
chr4 (158-222)||(16282916-16282980)
chr4 (287-381)||(11558621-11558716)
chr4 (158-200)||(11558510-11558552)
chr4 (136-168)||(9886997-9887029)
chr4 (64-178)||(13235237-13235341)
chr4 (136-170)||(20872219-20872253)
chr4 (132-181)||(30275168-30275217)
[»] chr3 (19 HSPs)
chr3 (59-222)||(19186781-19186944)
chr3 (59-180)||(21977104-21977225)
chr3 (59-180)||(21999535-21999656)
chr3 (61-180)||(22161732-22161851)
chr3 (66-178)||(10341062-10341174)
chr3 (85-178)||(10302744-10302837)
chr3 (59-180)||(16357814-16357933)
chr3 (64-180)||(16928556-16928670)
chr3 (158-219)||(17793443-17793504)
chr3 (158-219)||(19101883-19101944)
chr3 (287-381)||(19186991-19187086)
chr3 (287-379)||(5941544-5941637)
chr3 (158-203)||(15958242-15958287)
chr3 (158-222)||(5941685-5941749)
chr3 (287-381)||(21100502-21100596)
chr3 (166-222)||(21100644-21100700)
chr3 (140-181)||(21028871-21028912)
chr3 (140-181)||(25784203-25784244)
chr3 (294-322)||(15958140-15958168)
[»] chr2 (12 HSPs)
chr2 (59-180)||(29718090-29718211)
chr2 (78-182)||(26861203-26861307)
chr2 (96-178)||(18985269-18985351)
chr2 (158-221)||(44583947-44584010)
chr2 (287-381)||(44583812-44583907)
chr2 (292-381)||(23651684-23651774)
chr2 (164-222)||(24788601-24788659)
chr2 (294-381)||(24788715-24788803)
chr2 (160-200)||(21554002-21554042)
chr2 (158-222)||(23651814-23651878)
chr2 (287-322)||(21553897-21553932)
chr2 (138-180)||(22497193-22497234)
[»] chr7 (9 HSPs)
chr7 (59-173)||(16068058-16068172)
chr7 (66-178)||(9692984-9693096)
chr7 (158-222)||(22612545-22612609)
chr7 (158-222)||(11657709-11657773)
chr7 (287-381)||(11657821-11657916)
chr7 (158-222)||(13475087-13475151)
chr7 (287-381)||(13474944-13475039)
chr7 (286-323)||(22612461-22612498)
chr7 (137-181)||(18466884-18466928)
[»] scaffold0385 (1 HSPs)
scaffold0385 (59-180)||(16144-16265)
[»] chr8 (8 HSPs)
chr8 (59-178)||(10454067-10454186)
chr8 (59-182)||(15727753-15727879)
chr8 (59-111)||(1683229-1683281)
chr8 (62-118)||(17861385-17861441)
chr8 (60-107)||(1681192-1681239)
chr8 (166-200)||(17883301-17883335)
chr8 (141-182)||(19862363-19862404)
chr8 (141-182)||(19867000-19867041)
[»] chr1 (4 HSPs)
chr1 (59-178)||(21496562-21496680)
chr1 (59-180)||(17451406-17451525)
chr1 (144-180)||(15545327-15545363)
chr1 (142-182)||(43154381-43154421)
[»] chr5 (10 HSPs)
chr5 (59-173)||(25791827-25791941)
chr5 (59-182)||(14137949-14138072)
chr5 (85-176)||(32948837-32948927)
chr5 (66-130)||(23909173-23909237)
chr5 (280-382)||(24761028-24761131)
chr5 (59-179)||(13938961-13939079)
chr5 (132-173)||(25756303-25756344)
chr5 (85-175)||(25581329-25581419)
chr5 (158-200)||(24760922-24760964)
chr5 (136-180)||(24564983-24565027)
[»] scaffold0010 (1 HSPs)
scaffold0010 (59-173)||(143102-143216)
[»] scaffold0364 (1 HSPs)
scaffold0364 (85-178)||(14588-14681)
[»] scaffold0118 (1 HSPs)
scaffold0118 (59-164)||(11955-12060)
[»] chr6 (7 HSPs)
chr6 (59-178)||(19545140-19545254)
chr6 (59-173)||(14746549-14746663)
chr6 (126-180)||(26587843-26587897)
chr6 (120-173)||(22395459-22395512)
chr6 (126-181)||(26588160-26588215)
chr6 (59-92)||(22395518-22395551)
chr6 (158-222)||(15119009-15119072)
[»] scaffold0408 (1 HSPs)
scaffold0408 (59-173)||(14984-15098)
[»] scaffold0290 (1 HSPs)
scaffold0290 (70-170)||(11838-11938)
[»] scaffold1043 (1 HSPs)
scaffold1043 (59-173)||(516-631)
[»] scaffold0094 (1 HSPs)
scaffold0094 (59-178)||(2496-2609)
[»] scaffold0207 (1 HSPs)
scaffold0207 (85-175)||(737-827)
[»] scaffold0166 (2 HSPs)
scaffold0166 (280-382)||(3525-3628)
scaffold0166 (158-200)||(3419-3461)
[»] scaffold0145 (1 HSPs)
scaffold0145 (158-222)||(14735-14799)
[»] scaffold0381 (1 HSPs)
scaffold0381 (136-168)||(11515-11547)
[»] scaffold0035 (1 HSPs)
scaffold0035 (141-182)||(15397-15438)
[»] scaffold0149 (1 HSPs)
scaffold0149 (126-182)||(35468-35523)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 12230807 - 12230970
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12230807 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagacaaccctcccataatagattaagataccctaaagtgcaaa 12230906  T
Q  159 gattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactaggg 222  Q
    |||| |||||||||||||||||| |||||||||||| ||||| ||||| |||||||||| ||||    
T  12230907 gattatcccccttacctcgaatctgtagaaaccttcagtttggcttgatgttgctacacgaggg 12230970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 59 - 178
Target Start/End: Original strand, 13268018 - 13268137
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    ||||||||||||||| |||||||||||||||||| | ||||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  13268018 catcatcattctctcgtcaaaattcacatcataacaacaacaatgtattaaaatttaagaaaaccctcccatcataaattaagataccctaaagtgcaaa 13268117  T
Q  159 gattctcccccttacctcga 178  Q
    ||||||||||||||||||||    
T  13268118 gattctcccccttacctcga 13268137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 287 - 387
Target Start/End: Original strand, 12231018 - 12231118
Alignment:
Q  287 aaaattgatttctaatccctaatattcttatttatatcgggctcattaatctctataattgtttttcttccttaagcactactcttttacttctctgctc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||    
T  12231018 aaaattgatttctaatccctaatattcttatttatatcgggctcattaatctctataattgcttttctttcctaagcactactcttttacttctctcctc 12231117  T
Q  387 c 387  Q
    |    
T  12231118 c 12231118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 19727647 - 19727534
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    ||||||||||||||| |||||||||||||||||| || |||||||| ||||||||||||| ||||||||| | |||||||||||||||||||||||||||    
T  19727647 catcatcattctctcgtcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcccgtcatagattaagataccctaaagtgcaaa 19727548  T
Q  159 gattctccccctta 172  Q
    |||||||| |||||    
T  19727547 gattctccgcctta 19727534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 13559473 - 13559361
Alignment:
Q  66 attctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctc 165  Q
    |||||||||||||| ||| |||||||| | ||||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||    
T  13559473 attctctcatcaaacttctcatcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagatactctaaagtgcaaagattctc 13559374  T
Q  166 ccccttacctcga 178  Q
    | |||||||||||    
T  13559373 ctccttacctcga 13559361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 59 - 178
Target Start/End: Complemental strand, 18554830 - 18554716
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||     || |||||||  || |||||||||||||||||||||||||||    
T  18554830 catcatcattttctcatcaaaattcacatcataacagcaacaacatattaaaa-----gacaaccctcatatcatagattaagataccctaaagtgcaaa 18554736  T
Q  159 gattctcccccttacctcga 178  Q
    ||||||||||||||||||||    
T  18554735 gattctcccccttacctcga 18554716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 59 - 173
Target Start/End: Original strand, 17419480 - 17419594
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||  || || | |||||||||||||||||||||||||||    
T  17419480 catcatcattctctcatcaaaattcacatcataatagtaacaacattttaaaatttaaaacaaatcttccttcatagattaagataccctaaagtgcaaa 17419579  T
Q  159 gattctcccccttac 173  Q
    |||||| ||||||||    
T  17419580 gattcttccccttac 17419594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 15871061 - 15870940
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    ||||||||||| |||||||||||| ||||||||| || || |    |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||    
T  15871061 catcatcattcactcatcaaaatttacatcataacagaaaaagtgcattaaaatttaagacaaccctcccatcataaattaagataccctaaagtgcaaa 15870962  T
Q  159 gattctcccccttacctcgaat 180  Q
    ||||||||||||||||| ||||    
T  15870961 gattctcccccttaccttgaat 15870940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 15888636 - 15888515
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    ||||||||||| |||||||| ||| ||||||||| ||||| |    |||||||||||||| ||||||||||| ||| ||| ||||| |||||||||||||    
T  15888636 catcatcattcactcatcaatatttacatcataacagcaaaagtgcattaaaatttaagacaaccctcccatcataaatttagatatcctaaagtgcaaa 15888537  T
Q  159 gattctcccccttacctcgaat 180  Q
    ||||||||| ||||||| ||||    
T  15888536 gattctccctcttaccttgaat 15888515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 8808812 - 8808857
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttgact 203  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||    
T  8808812 agattctcccccttacctcaaatccgtagaaacctttggtttgact 8808857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 16282980 - 16282916
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactaggg 222  Q
    |||||||||||||||||||||| |||||||||| || ||||||||| || |||||| || |||||    
T  16282980 agattctcccccttacctcgaacccgtagaaacatttggtttgactcgatgttgctgcagtaggg 16282916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 381
Target Start/End: Original strand, 11558621 - 11558716
Alignment:
Q  287 aaaattgatttctaatccctaatattcttatttatatc-gggctcattaatctctataattgtttttcttccttaagcactactcttttacttctc 381  Q
    |||| |||||||||| |||||||||||  ||||||||  ||||||| |||||  ||||||||  ||| || |||| ||||||||||||||||||||    
T  11558621 aaaactgatttctaaaccctaatattcccatttatatatgggctcactaatcgttataattgcctttatttcttacgcactactcttttacttctc 11558716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 11558510 - 11558552
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttg 200  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  11558510 agattctcctccttacctagaatccgtagaaaccttcggtttg 11558552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 9886997 - 9887029
Alignment:
Q  136 attaagataccctaaagtgcaaagattctcccc 168  Q
    |||||||||||||||||||||||||||||||||    
T  9886997 attaagataccctaaagtgcaaagattctcccc 9887029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 13235237 - 13235341
Alignment:
Q  64 tcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattc 163  Q
    |||||||||| |||||||||||||||||| |  |||||||||||||||          |||| || | ||| ||||| ||||||||||||||||||||||    
T  13235237 tcattctctcgtcaaaattcacatcataacactaacaacatattaaaa----------cccttccgtcataaattaatataccctaaagtgcaaagattc 13235326  T
Q  164 tcccccttacctcga 178  Q
     |||  |||||||||    
T  13235327 ccccgtttacctcga 13235341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 20872253 - 20872219
Alignment:
Q  136 attaagataccctaaagtgcaaagattctccccct 170  Q
    |||||||||||| ||||||||||||||||||||||    
T  20872253 attaagatacccaaaagtgcaaagattctccccct 20872219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 30275217 - 30275168
Alignment:
Q  132 atagattaagataccctaaagtgcaaagattctcccccttacctcgaatc 181  Q
    ||||| |||| |||||||||||| || ||||||||| |||||||||||||    
T  30275217 atagaataagttaccctaaagtgaaatgattctcccacttacctcgaatc 30275168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 19186781 - 19186944
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    ||||||||||| || ||||||||||||||||||| ||||||||  |||||||||||||||  |||| ||||| ||| |||||||||||||||||||||||    
T  19186781 catcatcattcactgatcaaaattcacatcataacagcaacaatgtattaaaatttaagacgacccacccatcataaattaagataccctaaagtgcaaa 19186880  T
Q  159 gattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactaggg 222  Q
    |||||||| ||||||||||||||||||||||||||||||||| || || |||||| | ||||||    
T  19186881 gattctcctccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgccctaggg 19186944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 59 - 180
Target Start/End: Original strand, 21977104 - 21977225
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    ||||||||||| |||||||||||||||||||||| ||||||||  ||||||||||||||| |||||| |||| ||| |||||||||||||||||||||||    
T  21977104 catcatcattcactcatcaaaattcacatcataacagcaacaatgtattaaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaa 21977203  T
Q  159 gattctcccccttacctcgaat 180  Q
    |||||| |||||||||| ||||    
T  21977204 gattctaccccttaccttgaat 21977225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 59 - 180
Target Start/End: Original strand, 21999535 - 21999656
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    ||||||||||| |||||||||||||||||||||| ||||||||  ||||||||||||||| |||||| |||| ||| |||||||||||||||||||||||    
T  21999535 catcatcattcactcatcaaaattcacatcataacagcaacaatgtattaaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaa 21999634  T
Q  159 gattctcccccttacctcgaat 180  Q
    |||||| |||||||||| ||||    
T  21999635 gattctaccccttaccttgaat 21999656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 22161732 - 22161851
Alignment:
Q  61 tcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaaga 160  Q
    ||||||||| |||||||||||||||||||||| ||||||||  |||| |||||||||| |||||| |||| ||| |||||||||||||||||||||||||    
T  22161732 tcatcattcactcatcaaaattcacatcataacagcaacaatgtattcaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaaga 22161831  T
Q  161 ttctcccccttacctcgaat 180  Q
    |||| |||||||||| ||||    
T  22161832 ttctaccccttaccttgaat 22161851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 10341062 - 10341174
Alignment:
Q  66 attctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctc 165  Q
    |||||||||||||||||| |||||||| | ||||||| ||||||||||||||| || |||||||  ||||||||||||||||||||||||||| ||||||    
T  10341062 attctctcatcaaaattctcatcataacatcaacaacttattaaaatttaagacaatcctcccaccatagattaagataccctaaagtgcaaatattctc 10341161  T
Q  166 ccccttacctcga 178  Q
    |||||||| ||||    
T  10341162 ccccttacttcga 10341174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 10302744 - 10302837
Alignment:
Q  85 catcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctcccccttacctcga 178  Q
    |||||||| | ||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  10302744 catcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctcccccgtacttcga 10302837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 16357933 - 16357814
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    ||||||||||| |||||||| ||| ||||||||| ||||| |    |||||||||||||| |||| |||||| ||| |||||||||||||||||||||||    
T  16357933 catcatcattcactcatcaacatttacatcataacagcaaaagtgcattaaaatttaagacaacc-tcccatcataaattaagataccctaaagtgcaaa 16357835  T
Q  159 gattctcccccttacctcgaat 180  Q
    |||||| |||||||||||||||    
T  16357834 gattct-ccccttacctcgaat 16357814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 16928556 - 16928670
Alignment:
Q  64 tcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctc-ccataatagattaagataccctaaagtgcaaagatt 162  Q
    |||| ||||| || ||||||||| |||||   ||||||||||||||||||||||| ||||||  |||| ||||||||||||||  ||||||| ||| |||    
T  16928556 tcatcctctcgtccaaattcacaccataa---caacaacatattaaaatttaagacaaccctttccatcatagattaagatactttaaagtgaaaatatt 16928652  T
Q  163 ctcccccttacctcgaat 180  Q
    ||| ||||||||||||||    
T  16928653 ctctcccttacctcgaat 16928670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 17793443 - 17793504
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacacta 219  Q
    |||||||||||||||||||||||| |||||||||||||||||| || || |||||| |||||    
T  17793443 agattctcccccttacctcgaatctgtagaaaccttcggtttggctcgatgttgctgcacta 17793504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 19101883 - 19101944
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacacta 219  Q
    |||||||||||||||||||||||| |||||||||||||||||| || || |||||| |||||    
T  19101883 agattctcccccttacctcgaatctgtagaaaccttcggtttggctcgatgttgctgcacta 19101944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 381
Target Start/End: Original strand, 19186991 - 19187086
Alignment:
Q  287 aaaattgatttctaatccctaatattcttatttata-tcgggctcattaatctctataattgtttttcttccttaagcactactcttttacttctc 381  Q
    |||| |||||||||||||||||||||| |||||||| |  ||||||||| || |||||||||| || ||| | ||  |||||||||||||||||||    
T  19186991 aaaactgatttctaatccctaatattcctatttatattttggctcattattcgctataattgtcttcctttcctacacactactcttttacttctc 19187086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 379
Target Start/End: Complemental strand, 5941637 - 5941544
Alignment:
Q  287 aaaattgatttctaatccctaatattcttatttatatc-gggctcattaatctctataattgtttttcttccttaagcactactcttttacttc 379  Q
    |||| |||||||||||||||||||||| ||||||||||  |||||| || ||||||||||||  || |||  ||| ||| ||||||||||||||    
T  5941637 aaaactgatttctaatccctaatattcatatttatatctaggctcactattctctataattgccttccttttttatgcaatactcttttacttc 5941544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 15958287 - 15958242
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttgact 203  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  15958287 agattctcccccttacctcaaatccgtagaaaccttcggttggact 15958242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 5941749 - 5941685
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactaggg 222  Q
    |||||||| |||||||||| ||||| |||||||||| ||||||||  || |||||||||||||||    
T  5941749 agattctctcccttacctcaaatccatagaaacctttggtttgacccgatgttgctacactaggg 5941685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 21100596 - 21100502
Alignment:
Q  287 aaaattgatttctaatccctaatattcttatttata-tcgggctcattaatctctataattgtttttcttccttaagcactactcttttacttctc 381  Q
    ||||||||||| |||||||||||||||||||||||| | ||||||   |||  |||||||||| || ||| |||| ||| ||||||||||||||||    
T  21100596 aaaattgatttttaatccctaatattcttatttatatttgggctc-gcaattgctataattgtcttcctttcttacgcagtactcttttacttctc 21100502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 21100700 - 21100644
Alignment:
Q  166 ccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactaggg 222  Q
    ||||||||||| ||||| ||||||||||||||||| || || |||||| ||||||||    
T  21100700 ccccttacctcaaatccatagaaaccttcggtttggctcgatgttgctgcactaggg 21100644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 21028871 - 21028912
Alignment:
Q  140 agataccctaaagtgcaaagattctcccccttacctcgaatc 181  Q
    ||||||||||||||| || || ||||||||||||||||||||    
T  21028871 agataccctaaagtgaaaggaatctcccccttacctcgaatc 21028912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 25784244 - 25784203
Alignment:
Q  140 agataccctaaagtgcaaagattctcccccttacctcgaatc 181  Q
    ||||||||||||||| || || ||||||||||||||||||||    
T  25784244 agataccctaaagtgaaaggaatctcccccttacctcgaatc 25784203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 322
Target Start/End: Complemental strand, 15958168 - 15958140
Alignment:
Q  294 atttctaatccctaatattcttatttata 322  Q
    |||||||||||||||||||||||||||||    
T  15958168 atttctaatccctaatattcttatttata 15958140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 9e-46; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 29718211 - 29718090
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||||||||||    
T  29718211 catcatcattctctcatcaaaattcacatcataacaacaacaacatattaaaatttaagacaacccttccatcatagattaagatactctaaagtgcaaa 29718112  T
Q  159 gattctcccccttacctcgaat 180  Q
     |||||||||||||||||||||    
T  29718111 tattctcccccttacctcgaat 29718090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 26861307 - 26861203
Alignment:
Q  78 aaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctcccccttacctcg 177  Q
    ||||| ||| ||||| ||||| || |||||||||||||| | |||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||    
T  26861307 aaattaacaccataacagcaataatatattaaaatttaatacaacccttccatcatggattaagataccctaaagtgcaaagaatctcccccttacctcg 26861208  T
Q  178 aatcc 182  Q
    |||||    
T  26861207 aatcc 26861203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 18985351 - 18985269
Alignment:
Q  96 caacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctcccccttacctcga 178  Q
    ||||||||||||||||||||| | |||||||| || |||||||| |||||||||| ||||||||||||||||||||| |||||    
T  18985351 caacaacatattaaaatttaatacaaccctcctatcatagattacgataccctaatgtgcaaagattctcccccttatctcga 18985269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 44584010 - 44583947
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagg 221  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| |||||||    
T  44584010 agattctcccccttacctcaaatccgtagaaacctttggtttgacttgatgttgctgcactagg 44583947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 44583907 - 44583812
Alignment:
Q  287 aaaattgatttctaatccctaatattcttatttata-tcgggctcattaatctctataattgtttttcttccttaagcactactcttttacttctc 381  Q
    |||| |||||||||||||||||||||| |||||||| | |||||||||| || |||||||||| || ||| | ||  |||||||||||||||||||    
T  44583907 aaaactgatttctaatccctaatattcctatttatatttgggctcattattcgctataattgtcttgctttcctacacactactcttttacttctc 44583812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 381
Target Start/End: Complemental strand, 23651774 - 23651684
Alignment:
Q  292 tgatttctaatccctaatattcttatttatat-cgggctcattaatctctataattgtttttcttccttaagcactactcttttacttctc 381  Q
    |||||||||||||||||||||| |||||||||  ||| ||| |||||||||||||||  ||||||   || ||||||||||||||||||||    
T  23651774 tgatttctaatccctaatattcctatttatatatgggttcactaatctctataattgcatttctttactacgcactactcttttacttctc 23651684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 24788601 - 24788659
Alignment:
Q  164 tcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactaggg 222  Q
    ||||||||||||||||||||||||||||||||||||| || || |||||| ||||||||    
T  24788601 tcccccttacctcgaatccgtagaaaccttcggtttggctagaagttgctgcactaggg 24788659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 381
Target Start/End: Original strand, 24788715 - 24788803
Alignment:
Q  294 atttctaatccctaatattcttatttata-tcgggctcattaatctctataattgtttttcttccttaagcactactcttttacttctc 381  Q
    |||||||||||||||||||| |||||||| | ||||||| || || |||||||||| || ||| | || ||||||||||||||||||||    
T  24788715 atttctaatccctaatattcctatttatatttgggctcactattcgctataattgtcttcctttcatacgcactactcttttacttctc 24788803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 21554042 - 21554002
Alignment:
Q  160 attctcccccttacctcgaatccgtagaaaccttcggtttg 200  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  21554042 attctcccccttacctcgaatccgtagaaaccttcgttttg 21554002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 23651878 - 23651814
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactaggg 222  Q
    |||||||||||||||||||||||| ||||| |||||| ||||| || || |||||| || |||||    
T  23651878 agattctcccccttacctcgaatctgtagataccttcagtttggctcgatgttgctgcattaggg 23651814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 322
Target Start/End: Complemental strand, 21553932 - 21553897
Alignment:
Q  287 aaaattgatttctaatccctaatattcttatttata 322  Q
    |||| |||||||||||||||||||||||||||||||    
T  21553932 aaaactgatttctaatccctaatattcttatttata 21553897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 22497234 - 22497193
Alignment:
Q  138 taagataccctaaagtgcaaagattctcccccttacctcgaat 180  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  22497234 taagataccctaa-gtgcaaagattctcccccttagctcgaat 22497193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 59 - 173
Target Start/End: Complemental strand, 16068172 - 16068058
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    |||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| | |||||||||||||||||||| ||||||    
T  16068172 catcatcattttctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 16068073  T
Q  159 gattctcccccttac 173  Q
    |||||||||||||||    
T  16068072 gattctcccccttac 16068058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 9693096 - 9692984
Alignment:
Q  66 attctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctc 165  Q
    |||||||||||||| ||| |||||||| | ||||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||    
T  9693096 attctctcatcaaacttctcatcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagatactctaaagtgcaaagattctc 9692997  T
Q  166 ccccttacctcga 178  Q
    | |||||||||||    
T  9692996 ctccttacctcga 9692984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 22612609 - 22612545
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactaggg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||| || || |||| | ||||||||    
T  22612609 agattctcccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgttgcactaggg 22612545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 11657709 - 11657773
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactaggg 222  Q
    |||||||| ||||||||||||||||||||||||||| |||||| ||||| || ||| ||||||||    
T  11657709 agattctcacccttacctcgaatccgtagaaacctttggtttggcttgatgtagctgcactaggg 11657773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 381
Target Start/End: Original strand, 11657821 - 11657916
Alignment:
Q  287 aaaattgatttctaatccctaatattcttatttata-tcgggctcattaatctctataattgtttttcttccttaagcactactcttttacttctc 381  Q
    |||| |||||||||||||||||||||| |||||||| | ||||||| || || |||||||||| || ||| | ||  |||||||||||||||||||    
T  11657821 aaaactgatttctaatccctaatattcctatttatatttgggctcactattcgctataattgtcttcctttcctacacactactcttttacttctc 11657916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 13475151 - 13475087
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactaggg 222  Q
    ||||||| ||| |||||||||||||||||||||||||| |||| || || |||||| ||||||||    
T  13475151 agattcttccctttacctcgaatccgtagaaaccttcgatttgcctcgatgttgctgcactaggg 13475087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 13475039 - 13474944
Alignment:
Q  287 aaaattgatttctaatccctaatattcttatttata-tcgggctcattaatctctataattgtttttcttccttaagcactactcttttacttctc 381  Q
    |||| ||||||||||||||||||| || |||||||| | ||||||| |  | ||||||||||| ||  || | || ||||||||||||||||||||    
T  13475039 aaaactgatttctaatccctaatactcctatttatatttgggctcactgttttctataattgtattcatttcctatgcactactcttttacttctc 13474944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 22612498 - 22612461
Alignment:
Q  286 aaaaattgatttctaatccctaatattcttatttatat 323  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  22612498 aaaaactgatttctaatccctaatattcctatttatat 22612461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 18466928 - 18466884
Alignment:
Q  137 ttaagataccctaaagtgcaaagattctcccccttacctcgaatc 181  Q
    ||||||||||||||||   |||||||||||||||||| |||||||    
T  18466928 ttaagataccctaaaggaaaaagattctcccccttacatcgaatc 18466884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 59 - 180
Target Start/End: Original strand, 16144 - 16265
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    ||||||||||| |||||||||||||||||||||| ||||||||  |||||||||||||||  |||||||||| ||| |||||||||||||||||| ||||    
T  16144 catcatcattcactcatcaaaattcacatcataaaagcaacaatgtattaaaatttaagacgaccctcccatcataaattaagataccctaaagtacaaa 16243  T
Q  159 gattctcccccttacctcgaat 180  Q
    ||||||||||||||||||||||    
T  16244 gattctcccccttacctcgaat 16265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 59 - 178
Target Start/End: Complemental strand, 10454186 - 10454067
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| || || ||||| ||||| |||||||||||||||||||||| ||||    
T  10454186 catcatcattctctcatcaaaattcacaccataacagcaaaaacatattaaaatataggacaacccacccatcatagattaagataccctaaagttcaaa 10454087  T
Q  159 gattctcccccttacctcga 178  Q
    |||||| |||||||||||||    
T  10454086 gattcttccccttacctcga 10454067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 15727753 - 15727879
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctc------ccataatagattaagataccctaaag 152  Q
    |||| |||| ||||||| ||||||||||||||||   ||||||||||||||||| ||| | |||||||      |||| |||||||||||||||||||||    
T  15727753 catcttcatcctctcataaaaattcacatcataa---caacaacatattaaaatctaatacaaccctctcaatcccatcatagattaagataccctaaag 15727849  T
Q  153 tgcaaagattctcccccttacctcgaatcc 182  Q
    || || ||||||||||||||||||||||||    
T  15727850 tgtaaggattctcccccttacctcgaatcc 15727879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 1683229 - 1683281
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaa 111  Q
    |||||||| |||||||||||||||||||||||||  |||||||||||||||||    
T  1683229 catcatcagtctctcatcaaaattcacatcataaccgcaacaacatattaaaa 1683281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 17861441 - 17861385
Alignment:
Q  62 catcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaaga 118  Q
    |||||||||||||||||||||||| |||||| || |||||||| |||||||||||||    
T  17861441 catcattctctcatcaaaattcacgtcataacagtaacaacattttaaaatttaaga 17861385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 1681192 - 1681239
Alignment:
Q  60 atcatcattctctcatcaaaattcacatcataatagcaacaacatatt 107  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||||    
T  1681192 atcatcagtctctcatcaaaattcacatcataaccgcaacaacatatt 1681239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 17883301 - 17883335
Alignment:
Q  166 ccccttacctcgaatccgtagaaaccttcggtttg 200  Q
    ||||||||||||||||| |||||||||||||||||    
T  17883301 ccccttacctcgaatccatagaaaccttcggtttg 17883335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 19862363 - 19862404
Alignment:
Q  141 gataccctaaagtgcaaagattctcccccttacctcgaatcc 182  Q
    |||||||||||||| || || |||||||||||||||||||||    
T  19862363 gataccctaaagtgaaaggaatctcccccttacctcgaatcc 19862404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 19867000 - 19867041
Alignment:
Q  141 gataccctaaagtgcaaagattctcccccttacctcgaatcc 182  Q
    |||||||||||||| || || |||||||||||||||||||||    
T  19867000 gataccctaaagtgaaaggaatctcccccttacctcgaatcc 19867041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 59 - 178
Target Start/End: Original strand, 21496562 - 21496680
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    ||||||||||||||||| || ||||| |||||| ||| ||||||||||| |||||||||| |||||||||| | ||||||||||||||||||||||||||    
T  21496562 catcatcattctctcataaatattcatatcatattagaaacaacatatttaaatttaagataaccctcccaca-tagattaagataccctaaagtgcaaa 21496660  T
Q  159 gattctcccccttacctcga 178  Q
    ||||||||||||||||||||    
T  21496661 gattctcccccttacctcga 21496680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 180
Target Start/End: Original strand, 17451406 - 17451525
Alignment:
Q  59 catcatcattctctcatcaaaat-tcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaa 157  Q
    |||||| | |||||||||| ||| ||||||||||| ||||||| ||| |||| | ||||  |  |||||| || ||| ||||||||||||||||||||||    
T  17451406 catcataaatctctcatcacaatctcacatcataagagcaacatcatcttaagaattaatta--ccctcc-atcatatattaagataccctaaagtgcaa 17451502  T
Q  158 agattctcccccttacctcgaat 180  Q
    |||||||  ||||| ||||||||    
T  17451503 agattctatcccttccctcgaat 17451525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 15545327 - 15545363
Alignment:
Q  144 accctaaagtgcaaagattctcccccttacctcgaat 180  Q
    ||||||||||||||||||||| |||||||||||||||    
T  15545327 accctaaagtgcaaagattctaccccttacctcgaat 15545363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 43154421 - 43154381
Alignment:
Q  142 ataccctaaagtgcaaagattctcccccttacctcgaatcc 182  Q
    ||||||||||||  | |||||||||||||||||||||||||    
T  43154421 ataccctaaagttaagagattctcccccttacctcgaatcc 43154381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 59 - 173
Target Start/End: Original strand, 25791827 - 25791941
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    ||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||||  | |||||||||||||||||||||| ||||    
T  25791827 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagaaaaccctcctgtcatagattaagataccctaaagttcaaa 25791926  T
Q  159 gattctcccccttac 173  Q
    ||||||||| |||||    
T  25791927 gattctccctcttac 25791941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 14137949 - 14138072
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    |||||| ||||  ||||||||||||||| ||||| | |||||||||||||| |||||||| ||||||||||| | | | ||||||||||||||||  | |    
T  14137949 catcattattccttcatcaaaattcacagcataacaacaacaacatattaagatttaagacaaccctcccatcaaataataagataccctaaagtaaaga 14138048  T
Q  159 gattctcccccttacctcgaatcc 182  Q
    |||| |||||||||||||||||||    
T  14138049 gattgtcccccttacctcgaatcc 14138072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 32948837 - 32948927
Alignment:
Q  85 catcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctcccccttacctc 176  Q
    |||||||| |||||||||||||||||||| |||| ||||||||||| | ||||| |||||| ||||||||||||||||||||||||||||||    
T  32948837 catcataacagcaacaacatattaaaattaaagacaaccctcccatca-agatttagatactctaaagtgcaaagattctcccccttacctc 32948927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 23909173 - 23909237
Alignment:
Q  66 attctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccat 130  Q
    |||||||||||||||||| |||||||| | ||||||| ||||||||||||||| |||||||||||    
T  23909173 attctctcatcaaaattctcatcataacaacaacaacttattaaaatttaagacaaccctcccat 23909237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 382
Target Start/End: Original strand, 24761028 - 24761131
Alignment:
Q  280 atcagcaaaaattgatttctaatccctaatattcttatttatat-cgggctcattaatctctataattgtttttcttccttaagcactactcttttactt 378  Q
    |||||| |||| ||||||||||||| |||||||| |||||||||  | ||||| ||||||||||||||   |||||| | || |||||||||||||||||    
T  24761028 atcagccaaaactgatttctaatccataatattcctatttatatatgagctcactaatctctataatttcctttctttcctacgcactactcttttactt 24761127  T
Q  379 ctct 382  Q
    ||||    
T  24761128 ctct 24761131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 13938961 - 13939079
Alignment:
Q  59 catcatcattctctcatcaaaat-tcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaa 157  Q
    |||||| | |||||||||||||| ||||||||||| | ||||||||| |||| | ||||  | ||| ||| || ||| |||||||||| |||||||||||    
T  13938961 catcataaatctctcatcaaaatctcacatcataacaacaacaacatcttaagaattaa--acaccgtcc-atcatatattaagatacactaaagtgcaa 13939057  T
Q  158 agattctcccccttacctcgaa 179  Q
    ||||||| || |||||||||||    
T  13939058 agattcttcctcttacctcgaa 13939079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 25756344 - 25756303
Alignment:
Q  132 atagattaagataccctaaagtgcaaagattctcccccttac 173  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  25756344 atagattaagataccctaaagtgcaaagattctccctcttac 25756303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 25581419 - 25581329
Alignment:
Q  85 catcataatagcaacaacata-ttaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctcccccttacct 175  Q
    |||||||| | |||||||||| |||||||| ||||    ||||| || |||||| |||||||||||||||| ||||||||||||||||||||    
T  25581419 catcataacaacaacaacataattaaaattaaagacgttcctccaatcatagat-aagataccctaaagtggaaagattctcccccttacct 25581329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 24760922 - 24760964
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttg 200  Q
    |||||| ||| |||||||||||||| |||||||||||||||||    
T  24760922 agattccccctcttacctcgaatccttagaaaccttcggtttg 24760964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 24564983 - 24565027
Alignment:
Q  136 attaagataccctaaagtgcaaagattctcccccttacctcgaat 180  Q
    ||||||| ||||||||||||||||||| | ||| |||||||||||    
T  24564983 attaagagaccctaaagtgcaaagatttttcccattacctcgaat 24565027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 59 - 173
Target Start/End: Original strand, 143102 - 143216
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    |||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||||| |||| |||||| ||||||||||||||| ||||||| |||    
T  143102 catcatcaatctctcatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccttcccatcatagattaagataccataaagtgaaaa 143201  T
Q  159 gattctcccccttac 173  Q
    ||||| |||||||||    
T  143202 gattcacccccttac 143216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 14588 - 14681
Alignment:
Q  85 catcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctcccccttacctcga 178  Q
    |||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14588 catcataacagcaacaacatattgaaattaaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctcccccttacctcga 14681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 11955 - 12060
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    |||||||||||||||||||||||||||||||||| ||||||||   |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||    
T  11955 catcatcattctctcatcaaaattcacatcataacagcaacaatgaattaaaatttaagacaaccctcccatcataaattaagataccctaaagtgcaaa 12054  T
Q  159 gattct 164  Q
     |||||    
T  12055 tattct 12060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 59 - 178
Target Start/End: Complemental strand, 19545254 - 19545140
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||||||||||     || |||||||  || |||||||||||||||||||||||||||    
T  19545254 catcatcattttctcatcaaaattcacattataacagcaacaacatattaaaa-----gacaaccctcatatcatagattaagataccctaaagtgcaaa 19545160  T
Q  159 gattctcccccttacctcga 178  Q
    ||||||||||||||||||||    
T  19545159 gattctcccccttacctcga 19545140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 59 - 173
Target Start/End: Original strand, 14746549 - 14746663
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    ||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||||  |||| || | | |||||||||||||||||| ||||||||    
T  14746549 catcatcattctctcataaaaattcacatcataacagtaacaacattttaaaatttaagtcaaccttctcctcatagattaagataccctatagtgcaaa 14746648  T
Q  159 gattctcccccttac 173  Q
    |||||||||||||||    
T  14746649 gattctcccccttac 14746663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 26587843 - 26587897
Alignment:
Q  126 cccataatagattaagataccctaaagtgcaaagattctcccccttacctcgaat 180  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  26587843 cccatcatagattaagataccctaaagtgaaaagattctcccctttacctcgaat 26587897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 22395512 - 22395459
Alignment:
Q  120 aaccctcccataatagattaagataccctaaagtgcaaagattctcccccttac 173  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  22395512 aaccctcccatcatatattaagataccctaaagtgcaaagactctcccccttac 22395459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 26588160 - 26588215
Alignment:
Q  126 cccataatagattaagataccctaaagtgcaaagattctcccccttacctcgaatc 181  Q
    ||||| ||||||||||||||||||||||| || ||  |||||||||||||||||||    
T  26588160 cccatcatagattaagataccctaaagtgaaaggaacctcccccttacctcgaatc 26588215  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 22395551 - 22395518
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataa 92  Q
    ||||||| ||||||||||||||||||||||||||    
T  22395551 catcatctttctctcatcaaaattcacatcataa 22395518  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 15119009 - 15119072
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactaggg 222  Q
    ||||||| ||||||||||||||| |||||||||||||| |||  || || |||||| ||||||||    
T  15119009 agattcttccccttacctcgaat-cgtagaaaccttcgatttagctcgatgttgctgcactaggg 15119072  T

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Target: scaffold0408 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 59 - 173
Target Start/End: Original strand, 14984 - 15098
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    ||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||||  |||| || | | |||||||||||||||||| ||||||||    
T  14984 catcatcattctctcataaaaattcacatcataacagtaacaacattttaaaatttaagtcaaccttctcctcatagattaagataccctatagtgcaaa 15083  T
Q  159 gattctcccccttac 173  Q
    |||||||||||||||    
T  15084 gattctcccccttac 15098  T

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Target: scaffold0290 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 11938 - 11838
Alignment:
Q  70 tctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctccccc 169  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||| | |||||||| || ||| |||| || ||||||||||||||||||||||||||    
T  11938 tctcatcaaaatttacatcataacagcaacaacatattaaaatttaatacaaccctcctatcataaattacgacaccctaaagtgcaaagattctccccc 11839  T
Q  170 t 170  Q
    |    
T  11838 t 11838  T

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Target: scaffold1043 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 59 - 173
Target Start/End: Complemental strand, 631 - 516
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaa-tttaagaaaaccctcccataatagattaagataccctaaagtgcaa 157  Q
    ||||||||||||||||| |||||||| ||||||| || |||||||| |||||| ||||||| ||||||| ||| |||||||||||||| ||| | |||||    
T  631 catcatcattctctcataaaaattcatatcataacagtaacaacattttaaaaatttaagacaaccctctcatcatagattaagatactctacattgcaa 532  T
Q  158 agattctcccccttac 173  Q
    ||||||||||||||||    
T  531 agattctcccccttac 516  T

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Target: scaffold0094 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 178
Target Start/End: Complemental strand, 2609 - 2496
Alignment:
Q  59 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 158  Q
    |||||||||| |||| |||||||||||||||||  ||||||||||||||||||| |||     |||||  || |||||||||||||||||||| ||||||    
T  2609 catcatcattttctcgtcaaaattcacatcataccagcaacaacatattaaaatataa-----ccctcatatcatagattaagataccctaaa-tgcaaa 2516  T
Q  159 gattctcccccttacctcga 178  Q
    ||||||||||||||||||||    
T  2515 gattctcccccttacctcga 2496  T

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Target: scaffold0207 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 827 - 737
Alignment:
Q  85 catcataatagcaacaacata-ttaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctcccccttacct 175  Q
    |||||||| |||||||||||| |||||||| |||| |||||||| || |||||||||||||||||||||||||||| |||||||||||||||    
T  827 catcataacagcaacaacataattaaaattaaagacaaccctccaatcatagattaagataccctaaagtgcaaag-ttctcccccttacct 737  T

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Target: scaffold0166 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 382
Target Start/End: Original strand, 3525 - 3628
Alignment:
Q  280 atcagcaaaaattgatttctaatccctaatattcttatttatat-cgggctcattaatctctataattgtttttcttccttaagcactactcttttactt 378  Q
    |||||| |||| ||||||||||||| |||||||| |||||||||  | ||||| ||||||||||||||   |||||| | || |||||||||||||||||    
T  3525 atcagccaaaactgatttctaatccataatattcctatttatatatgagctcactaatctctataatttcctttctttcctacgcactactcttttactt 3624  T
Q  379 ctct 382  Q
    ||||    
T  3625 ctct 3628  T

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Target: scaffold0166; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 3419 - 3461
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttg 200  Q
    |||||| ||| |||||||||||||| |||||||||||||||||    
T  3419 agattccccctcttacctcgaatccttagaaaccttcggtttg 3461  T

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Target: scaffold0145 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 14735 - 14799
Alignment:
Q  158 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactaggg 222  Q
    |||||||||||||||||||||| |||||||||| || ||||||||| || |||||| || |||||    
T  14735 agattctcccccttacctcgaacccgtagaaacatttggtttgactcgatgttgctgcagtaggg 14799  T

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Target: scaffold0381 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 11547 - 11515
Alignment:
Q  136 attaagataccctaaagtgcaaagattctcccc 168  Q
    |||||||||||||||||||||||||||||||||    
T  11547 attaagataccctaaagtgcaaagattctcccc 11515  T

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Target: scaffold0035 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 15438 - 15397
Alignment:
Q  141 gataccctaaagtgcaaagattctcccccttacctcgaatcc 182  Q
    |||||||||||||| || || |||||||||||||||||||||    
T  15438 gataccctaaagtgaaaggaatctcccccttacctcgaatcc 15397  T

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Target: scaffold0149 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 35523 - 35468
Alignment:
Q  126 cccataatagattaagataccctaaagtgcaaagattctcccccttacctcgaatcc 182  Q
    ||||| ||||||||| |||||||||||||  | || |||||||||||||||||||||    
T  35523 cccatcatagattaa-ataccctaaagtggtaggaatctcccccttacctcgaatcc 35468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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