View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_27 (Length: 384)
Name: NF0673_low_27
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 30 - 366
Target Start/End: Complemental strand, 44974303 - 44973967
Alignment:
| Q |
30 |
agccaaatgagtgagtctaagctcgtttaaaagagaagaaacaatagcagcaatatcaatggttttaggcttaagaagagaagcagaaaaagcaaaagtt |
129 |
Q |
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| T |
44974303 |
agccaaatgagtgagtctaagctcgtttaaaagagaagaaacaatagcagcaatatcaatggttttaggcttaagaagagaagcagaaaaagcaaaagtt |
44974204 |
T |
|
| Q |
130 |
tcagaaacagttaacataggaagacatgcatcatgttgaggaacataagcagagagttttctgaatgtggaagggttagtgataggtgaagagttaaggg |
229 |
Q |
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| T |
44974203 |
tcagaaacagttaacataggaagacatgcatcatgttgaggaacataagcagagagttttctgaatgtagaagggttagtgataggtgaagagttaagag |
44974104 |
T |
|
| Q |
230 |
aaagtgtaccacttaagggtaatcttctagctgaaagaatgtctagaagagttgattttcctgcaccacttggaccaacaatggcaagaatctcagaagg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44974103 |
aaagtgtaccacttaagggtaatcttctagctgaaagaatgtctagaagagttgattttcctgcaccacttggaccaacaatggcaagaatctcagaagg |
44974004 |
T |
|
| Q |
330 |
gtatgctgtgagggaaacatctttgaggatgtagttt |
366 |
Q |
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| T |
44974003 |
gtatgctgtgagggaaacatctttgaggatgtagttt |
44973967 |
T |
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