View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_29 (Length: 381)
Name: NF0673_low_29
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 202 - 371
Target Start/End: Original strand, 1046272 - 1046443
Alignment:
| Q |
202 |
tttacttttatctaatat--atatgtaatcagggacacatataaggtgtaccatggtccacccatatttatatattattaattttttgcagtgttcaaat |
299 |
Q |
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| T |
1046272 |
tttacttttatctaatatatatatgtaatgagggacacatataaggtgtaccatggtccacccatatttatatattattaattttttgcagtgttcaaat |
1046371 |
T |
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| Q |
300 |
aactttaagatggttctactttaatcacagaacaatttataagttagagaaacaagtactatattgtctgtg |
371 |
Q |
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| T |
1046372 |
aactttaagatggttctactttaatcacagaacaatttataagttagagaaacaagtactatattgtctgtg |
1046443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 1044936 - 1045029
Alignment:
| Q |
29 |
agcttcaccaagaataaagaggaataatagattttgttgacatagtttgttttcctacttcgcatccttttactgtttcagttctctataaaca |
122 |
Q |
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| T |
1044936 |
agcttcaccaggaataaacaggaataatagattttgttgacatagtttgttttcctacttcgcatccttttactgtttcagttctctataaaca |
1045029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 1045056 - 1045144
Alignment:
| Q |
119 |
aacaacacttggtaannnnnnnatattagctaatggctaatgctgatttctacatatttctcaccgtcaatgattaatagtcatttact |
207 |
Q |
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| T |
1045056 |
aacaacacttggtaatttttttatattagctaatggctaatgctgatttctacattgttctcaccgtcaatgattaatagtcatttact |
1045144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 1024314 - 1024240
Alignment:
| Q |
149 |
taatggctaatgctgatttctacatatttctcaccgtcaatgattaatagtcatttacttttatctaatatatat |
223 |
Q |
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| T |
1024314 |
taatggctaatgctaatatctgcagtgttctcaccctcaatgatcaatggtcatttacttttgtctgatatatat |
1024240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 40641681 - 40641731
Alignment:
| Q |
176 |
ttctcaccgtcaatgattaatagtcatttacttttatctaatatatatgta |
226 |
Q |
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| T |
40641681 |
ttctcaccatcaatgatcaatggtcgtttacttttatctaatatatatgta |
40641731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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