View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_3 (Length: 615)
Name: NF0673_low_3
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 4856960 - 4857357
Alignment:
| Q |
1 |
aattgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattag |
99 |
Q |
| |
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||||||||||| ||||||||||| || ||||||||||||||| | |||||| ||||||| || ||||||||||||| | ||||||| | ||||||| |
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| T |
4856960 |
aattgaaatttgggaaaccactttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattag |
4857056 |
T |
|
| Q |
100 |
ccaaagtgctcaatgaaaatgatccttgcatgtaatttccatagatggatagtatgcaagagatgtgagattggtagtgaaggatggaaaatttctccca |
199 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4857057 |
ccaaagtggtcaatgaaaatgatccttgcatgtaatttccatagatggatagtatgcaagagatgtgagattggtagtgaaggatggaaaatttctccca |
4857156 |
T |
|
| Q |
200 |
tgatagaacgtatcaataacttctattgaccaaatgatttaaattttccattccaaattgatccattaattaaataataaaatgagttcatctttaggaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4857157 |
tgatagaacgtatcaataacttctattgaccaaatgatttaaattttccatcccaaattgatccattaattaaataataaaatgagttcatctttaggaa |
4857256 |
T |
|
| Q |
300 |
aatatccatatagcatttcattagatattaagtcgttaatacaagacggtatattaatataaatttgggagctagctcgagaggtgacacacgtgagttt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4857257 |
aatatccatatagcatttcattagatattaagtcgttaatacaagacggtatattaatataaatttgagagctagctcgagaggtgacacacgtgagttt |
4857356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 5195768 - 5195573
Alignment:
| Q |
1 |
aattgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattag |
99 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||| ||||||| ||||||||| |
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|
| T |
5195768 |
aattgaaatttaggaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattag |
5195669 |
T |
|
| Q |
100 |
ccaaagtgctcaatgaaaatgatccttgcatgtaatttccatagatggat-agtatgcaagagatgtgagattggtagtgaaggatggaaaatttc |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || |||||||||||| || |||| ||||||||||||| |
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| T |
5195668 |
ccaaagtgctcaatgaaaatgatccttgcatgtaatttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaaatttc |
5195573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 5160126 - 5159931
Alignment:
| Q |
1 |
aattgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattag |
99 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||| ||||||| ||||||||| |
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|
| T |
5160126 |
aattgaaatttaggaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattag |
5160027 |
T |
|
| Q |
100 |
ccaaagtgctcaatgaaaatgatccttgcatgtaatttccatagatggat-agtatgcaagagatgtgagattggtagtgaaggatggaaaatttc |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || |||||||||||| || |||| |||||||| |||| |
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|
| T |
5160026 |
ccaaagtgctcaatgaaaatgatccttgcatgtaatttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaactttc |
5159931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 4842483 - 4842678
Alignment:
| Q |
1 |
aattgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattag |
99 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||| | |||||||| | ||||||| |
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|
| T |
4842483 |
aattgaaatttaggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattag |
4842582 |
T |
|
| Q |
100 |
ccaaagtgctcaatgaaaatgatccttgcatgtaatttccatagatggat-agtatg-caagagatgtgagattggtagtgaaggatggaaaatttc |
194 |
Q |
| |
|
||||| || | | ||||||||||||||||||||||||| |||||| ||| || ||| |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
4842583 |
ccaaattgataagtgaaaatgatccttgcatgtaattttcatagagtgataagaatgtcaag-gatgtgagattggtagtgaaggatggaaaatttc |
4842678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 5173042 - 5172847
Alignment:
| Q |
1 |
aattgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattag |
99 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| | ||||||| |
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|
| T |
5173042 |
aattgaaatttaggaaaccactttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattag |
5172943 |
T |
|
| Q |
100 |
ccaaagtgctcaatgaaaatgatccttgcatgtaatttccatagatggat-agtatg-caagagatgtgagattggtagtgaaggatggaaaatttc |
194 |
Q |
| |
|
||||| || | | ||||||||||||||||||||||||| |||||| ||| || ||| |||| ||||||||||| || |||||||||||||||||| |
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|
| T |
5172942 |
ccaaaatgataagtgaaaatgatccttgcatgtaattttcatagagtgataagaatgtcaag-gatgtgagattactaatgaaggatggaaaatttc |
5172847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 5182371 - 5182179
Alignment:
| Q |
1 |
aattgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattag |
99 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||||||| | |||||| ||||||| || ||||||||||||| | ||||||| | ||||||| |
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|
| T |
5182371 |
aattgaaatttgggaaaccactttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattag |
5182275 |
T |
|
| Q |
100 |
ccaaagtgctcaatgaaaatgatccttgcatgtaatttccatagatggat-agtatgcaagagatgtgagattggtagtgaaggatggaaaatttc |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || |||||||||||| || |||| ||||||||||||| |
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|
| T |
5182274 |
ccaaagtgctcaatgaaaatgatccttgcatgtaatttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaaatttc |
5182179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 5213931 - 5213739
Alignment:
| Q |
1 |
aattgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattag |
99 |
Q |
| |
|
||||||||||| || |||||||| || |||||||||||||||| | | ||| |||| | | ||||||||||||||| | | |||||| | ||||||| |
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|
| T |
5213931 |
aattgaaatttgggtaaccactttgtcttttcagtttcaatgtttgcaccaatgctttgt---gatgaaatatatagatgctggagattggagtgattag |
5213835 |
T |
|
| Q |
100 |
ccaaagtgctcaatgaaaatgatccttgcatgtaatttccatagatggat-agtatgcaagagatgtgagattggtagtgaaggatggaaaatttc |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| || ||||||||||| || |||||||||||||||||| |
|
|
| T |
5213834 |
ccaaagtgctcaatgaaaatgatccttgcatgtaatttccaaagagggataagtatgccagtgatgtgagattactaatgaaggatggaaaatttc |
5213739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 5202885 - 5202773
Alignment:
| Q |
22 |
ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatga |
121 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||| | | || |||||||||||| || |||| |||| ||||||||||||||||| | |||||||| |
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|
| T |
5202885 |
ttgttttttaagtttcaatgtgttctccaatgctttct---gaggaaatatatagatcctgaagcgtgaagtgattagccaaagtgcttactgaaaatgg |
5202789 |
T |
|
| Q |
122 |
tccttgcatgtaattt |
137 |
Q |
| |
|
||||||| ||| |||| |
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|
| T |
5202788 |
tccttgcgtgtgattt |
5202773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 7142304 - 7142256
Alignment:
| Q |
3 |
ttgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactcca |
50 |
Q |
| |
|
||||||| ||||||||||||| || ||||||||||||| |||||||||| |
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|
| T |
7142304 |
ttgaaatctaggaaaccactttgtattttcagtttcaacgtgtactcca |
7142256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 416 - 514
Target Start/End: Complemental strand, 23206644 - 23206546
Alignment:
| Q |
416 |
acaaaccgatcaatcatggtttcaacgtcaatgatcatttgtggtgggactttattactagaaatagggatagtcttccattctttcattttcattgat |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23206644 |
acaaaccgatcaatcatggtttcaacgtcaaagatcacttgtggtgggactttattactagaaatagggatagtcttccattctttcattttcattgat |
23206546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 416 - 514
Target Start/End: Complemental strand, 23678248 - 23678150
Alignment:
| Q |
416 |
acaaaccgatcaatcatggtttcaacgtcaatgatcatttgtggtgggactttattactagaaatagggatagtcttccattctttcattttcattgat |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23678248 |
acaaaccgatcaatcatggtttcaacgtcaaagatcacttgtggtgggactttattactagaaatagggatagtcttccattctttcattttcattgat |
23678150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 998934 - 998988
Alignment:
| Q |
327 |
ttaagtcgttaatacaagacggtatattaatataaatttgggagctagctcgaga |
381 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||||| |||| |||||| ||||||| |
|
|
| T |
998934 |
ttaaatcgttaatacacgacgttatattaatataagtttgagagctaactcgaga |
998988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 11786942 - 11786979
Alignment:
| Q |
313 |
catttcattagatattaagtcgttaatacaagacggta |
350 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
11786942 |
cattttattagataataagtcgttaatacaagacggta |
11786979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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