View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_32 (Length: 353)
Name: NF0673_low_32
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 78 - 313
Target Start/End: Complemental strand, 46998410 - 46998175
Alignment:
| Q |
78 |
acatcatcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcag |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46998410 |
acatcatcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcag |
46998311 |
T |
|
| Q |
178 |
gccgtcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttaga |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46998310 |
gccgtcttgttactaaaaaatctgaagaccctcatttttacactgtttttgttgattgcaaaaacagtctcggagctaaatttattcatgcaactttaga |
46998211 |
T |
|
| Q |
278 |
tatcaccatcaatgatattctctcacctgatgatgt |
313 |
Q |
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||||||||||||||||||||||||||||| |||||| |
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| T |
46998210 |
tatcaccatcaatgatattctctcacctgttgatgt |
46998175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 78 - 295
Target Start/End: Complemental strand, 46981334 - 46981117
Alignment:
| Q |
78 |
acatcatcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcag |
177 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
46981334 |
acatcatcatcactaaaccaacaacatttcatagagaacctggtggagaaactgaaacactccctttccctcacgcttttccatttctatcccctctcag |
46981235 |
T |
|
| Q |
178 |
gccgtcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttaga |
277 |
Q |
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| T |
46981234 |
gtcgtcttgttactaaaaaatccgaagatcctgattcttacactgttttcgtcgattgcaaaaacagtcccggagctaaatttattcatgcaactttaga |
46981135 |
T |
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| Q |
278 |
tatcaccatcaatgatat |
295 |
Q |
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||||||||| |||||||| |
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| T |
46981134 |
tatcaccataaatgatat |
46981117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 126 - 304
Target Start/End: Complemental strand, 46996114 - 46995936
Alignment:
| Q |
126 |
aaactgaaacactccctttccctcacacttttccatttccatcccctctcaggccgtcttgttactaaaaaatctgaagaccctcatttttacactgttt |
225 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||| |
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| T |
46996114 |
aaactcaaacactccctttccctcacacttttccatttctatcccctctcaggtcgtcttgttactaaaaaatccgaagatcctcattcttacactgttt |
46996015 |
T |
|
| Q |
226 |
ttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatatcaccatcaatgatattctctcacc |
304 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46996014 |
ttgtcgattgcaaaaacagtctcggagctaaatttattcatgcaactttagatattaccatcaatgatattctctcacc |
46995936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 82 - 315
Target Start/End: Complemental strand, 46975343 - 46975110
Alignment:
| Q |
82 |
catcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcaggccg |
181 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||| | || || ||||| |||||||| ||||| ||||||||||| |||| ||||||| || || || |
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| T |
46975343 |
catcatcactaaaccaacaacacttcattgagaacctagtggacaaactcaaacactctctttctctcacactttttcattattatcccctgtctggtcg |
46975244 |
T |
|
| Q |
182 |
tcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatatc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
46975243 |
tcttgttactaaaaaatctgaagaccctcattcttacactgttttcgttgattgcaaaaacagtcgcggagctagatttattcatgcaactttagatatc |
46975144 |
T |
|
| Q |
282 |
accatcaatgatattctctcacctgatgatgtcc |
315 |
Q |
| |
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||||| ||||||||||||||||| | |||||||| |
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| T |
46975143 |
accataaatgatattctctcaccagttgatgtcc |
46975110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 315
Target Start/End: Complemental strand, 47001998 - 47001865
Alignment:
| Q |
182 |
tcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatatc |
281 |
Q |
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|||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
47001998 |
tcttgttactcaaaaatctgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtcgaggagctaaatttattcttgcaactttagatatc |
47001899 |
T |
|
| Q |
282 |
accatcaatgatattctctcacctgatgatgtcc |
315 |
Q |
| |
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||| |||||| |||||||||||||| |||||||| |
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| T |
47001898 |
accgtcaatgttattctctcacctgttgatgtcc |
47001865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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