View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_34 (Length: 349)
Name: NF0673_low_34
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 31159537 - 31159750
Alignment:
| Q |
1 |
gaaattaaaacaaaaagcatgtgagcaggcgaagacaacacaactttatttctccttttagagaattgttgttctcaactatagtttgaaaagggaaagt |
100 |
Q |
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| T |
31159537 |
gaaattaaaacaaaaagcatgtgagcaggcgaagacaacaaaactttatttctccttttagagaattgttgttctcaactatagtttgaaaagggaaagt |
31159636 |
T |
|
| Q |
101 |
gaaaacaaatatatattgttaaatttaattgtcaaacccttaaaatttgcatatgtaaaaccatcaatccgtagaaaattgcttacttatgacgcatatc |
200 |
Q |
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| T |
31159637 |
gaaaacaaatatatattgttaaatttaattgtcaaacccttaaaatttgcatatgtaaaaccatcaatccgtagaaaatttcttacttatgatgcatatc |
31159736 |
T |
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| Q |
201 |
ccaaccagagagat |
214 |
Q |
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| T |
31159737 |
ccaaccagagagat |
31159750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 31489371 - 31489264
Alignment:
| Q |
53 |
tccttttagagaattgttgttctcaactatagtttgaaaagggaaagtgaaaacaaatatatattgttaaatttaattgtcaaacccttaaaatttgcat |
152 |
Q |
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| T |
31489371 |
tccttgtagagaactgttgtgctaaactttagtttgaaaagggaaagtgaaatcaaatatacatggtaaaatttaattgtcaaagccttaaaatttgctt |
31489272 |
T |
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| Q |
153 |
atgtaaaa |
160 |
Q |
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||| |||| |
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| T |
31489271 |
atggaaaa |
31489264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 31163374 - 31163416
Alignment:
| Q |
75 |
tcaactatagtttgaaaagggaaagtgaaaacaaatatatatt |
117 |
Q |
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|
| T |
31163374 |
tcaactatagtttgaaaagagaaagtgaaatcaaatatatatt |
31163416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 31020246 - 31020288
Alignment:
| Q |
118 |
gttaaatttaattgtcaaacccttaaaatttgcatatgtaaaa |
160 |
Q |
| |
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|
| T |
31020246 |
gttaaatttaattgtcaaagccttaaaatctgcttatgtaaaa |
31020288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 31030127 - 31030169
Alignment:
| Q |
118 |
gttaaatttaattgtcaaacccttaaaatttgcatatgtaaaa |
160 |
Q |
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| T |
31030127 |
gttaaatttaattgtcaaagccttaaaatctgcttatgtaaaa |
31030169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 31034801 - 31034834
Alignment:
| Q |
178 |
attgcttacttatgacgcatatcccaaccagaga |
211 |
Q |
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| T |
31034801 |
attgcttacttatgacgcatatcccatccagaga |
31034834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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