View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_35 (Length: 348)
Name: NF0673_low_35
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_35 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 69 - 348
Target Start/End: Complemental strand, 8865643 - 8865363
Alignment:
| Q |
69 |
tgagatggacatcatcaagcaacctacacaacaagaagcaagtaagagtcgaggaaaaggaaaagtgccgcggcggagcttgaatagtttaatgaggaag |
168 |
Q |
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| T |
8865643 |
tgagatgaacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
8865544 |
T |
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| Q |
169 |
cgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagt-ctattacgttttataaaatctaga |
267 |
Q |
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| T |
8865543 |
cgaaagatatacaaccacataataaaattatttataccaaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga |
8865444 |
T |
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| Q |
268 |
aaagtactattaagttttcagtatcacacagcaagtatagaccatcaagatcttaagaagtttatttagaactttgaaaat |
348 |
Q |
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| T |
8865443 |
aaagtactattaagttttcagtatcacacagcaagaatagaccatcaagatcttaagcagtttatttagaactttgaaaat |
8865363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 69 - 348
Target Start/End: Original strand, 11127114 - 11127395
Alignment:
| Q |
69 |
tgagatggacatcatcaagcaacctacacaacaagaa-gcaagtaagagtcgaggaaaaggaaaagtgccgcggcggagcttgaatagtttaatgaggaa |
167 |
Q |
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| T |
11127114 |
tgagatgaacatcagcaagcaacctacacaacaagaaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgatgaa |
11127213 |
T |
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| Q |
168 |
gcgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagt-ctattacgttttataaaatctag |
266 |
Q |
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| T |
11127214 |
gcgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctag |
11127313 |
T |
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| Q |
267 |
aaaagtactattaagttttcagtatcacacagcaagtatagaccatcaagatcttaagaagtttatttagaactttgaaaat |
348 |
Q |
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| T |
11127314 |
aaaagtaatattaagttttcagtatcacacagcaagtataaactatcaagctcttaagcagtttatttagaactttgaaaat |
11127395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 69 - 267
Target Start/End: Complemental strand, 10893256 - 10893057
Alignment:
| Q |
69 |
tgagatggacatcatcaagcaacctacacaacaagaagcaagtaagagtcgaggaaaaggaaaagtgccgcggcggagcttgaatagtttaatgaggaag |
168 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10893256 |
tgagatgaacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
10893157 |
T |
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| Q |
169 |
cgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagt-ctattacgttttataaaatctaga |
267 |
Q |
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| T |
10893156 |
cgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga |
10893057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 69 - 348
Target Start/End: Original strand, 11155989 - 11156278
Alignment:
| Q |
69 |
tgagatggacatcatcaagcaacctacacaacaagaagcaagtaagagtcgaggaaaaggaaaagtgccgcggcggagcttgaatagtttaatgaggaag |
168 |
Q |
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||||||| |||||| |||||||||| ||||||||||| |||||| ||| | |||||||| |||| || | || ||| |||||||| ||| | ||||||| |
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| T |
11155989 |
tgagatgaacatcaacaagcaacctgcacaacaagaaacaagtatgaggccaggaaaagcgaaagagcagtggtggaacttgaataattttacgaggaag |
11156088 |
T |
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| Q |
169 |
cgaaagatatacaaccacataataaaattatt--tatactgaatatgtaataaaatgaatgttacaacac--agcaagtcta--ttacgttt----tata |
258 |
Q |
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| T |
11156089 |
tgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacacctatgaactctaacttgagattgtccaaca |
11156188 |
T |
|
| Q |
259 |
aaatctagaaaagtactattaagttttcagtatcacacagcaagtatagaccatcaagatcttaagaagtttatttagaactttgaaaat |
348 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| |
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| T |
11156189 |
aaatcaagaaaagtactagtaagttttcagtatcacacagcaagtatagaccatcaagatcttcagcaatttatttagaactttgaaaat |
11156278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 69 - 348
Target Start/End: Original strand, 11144811 - 11145103
Alignment:
| Q |
69 |
tgagatggacatcatcaagcaacctacacaacaagaagcaagtaa---gagtcgaggaaaaggaaaagtgccgcggcggagcttgaatagtttaatgagg |
165 |
Q |
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||||||| |||||| |||||||||||||| |||||||||||||| ||||| |||||||| |||| || | |||||| |||||||| ||| | |||| |
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| T |
11144811 |
tgagatgaacatcagcaagcaacctacaccacaagaagcaagtattatgagtccaggaaaagcgaaagagcagtggcggaacttgaataattttacgagg |
11144910 |
T |
|
| Q |
166 |
aagcgaaagatatacaaccacataataaaattatt--tatactgaatatgtaataaaatgaatgttacaacac--agcaagtcta--ttacgttt----t |
255 |
Q |
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||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| | || |||| || | || |
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| T |
11144911 |
aagtgaaagatatacaaccgcataataaaattatttatataccaaatatgtaataaaatgaatgttacaacacctatgaaatctaacttcagattgtcca |
11145010 |
T |
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| Q |
256 |
ataaaatctagaaaagtactattaagttttcagtatcacacagcaagtatagaccatcaagatcttaagaagtttatttagaactttgaaaat |
348 |
Q |
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| T |
11145011 |
acaaaatcaagaaaagtactaataagctttcagtatcacacagcaagtgcagaccatcaagatcttaagcaatttatttagaactttgaaaat |
11145103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 11193178 - 11193133
Alignment:
| Q |
258 |
aaaatctagaaaagtactattaagttttcagtatcacacagcaagt |
303 |
Q |
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|||||| |||||||||||| |||||||||||||| ||||||||||| |
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| T |
11193178 |
aaaatcaagaaaagtactactaagttttcagtattacacagcaagt |
11193133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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