View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0673_low_4 (Length: 609)
Name: NF0673_low_4
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_4 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0380 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 28 - 532
Target Start/End: Complemental strand, 13219764 - 13219260
Alignment:
| Q |
28 |
gacatcatcatggacataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattctt |
127 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13219764 |
gacatcattatggacataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattctt |
13219665 |
T |
|
| Q |
128 |
gccaatacattatcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaagcctgcaatgtatt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
13219664 |
gccaatacattatcctcattctgttcgggattgtaatcccgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaatcctgcaatgtatt |
13219565 |
T |
|
| Q |
228 |
gatgatgagtatataacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgtgttgagctaccaaagaagtaatgac |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13219564 |
gatgatgagtatataacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgtgttgagctaccaaagaagtaatgac |
13219465 |
T |
|
| Q |
328 |
ccctaatgaggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggagga |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
13219464 |
ccctaatgaggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacggcccaatctaccccccggagga |
13219365 |
T |
|
| Q |
428 |
atatgtgcttctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgat |
527 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13219364 |
atatgtgcttctaaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgat |
13219265 |
T |
|
| Q |
528 |
gatgt |
532 |
Q |
| |
|
||||| |
|
|
| T |
13219264 |
gatgt |
13219260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 473 - 532
Target Start/End: Complemental strand, 13217095 - 13217036
Alignment:
| Q |
473 |
ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt |
532 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13217095 |
ttagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt |
13217036 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 47842150 - 47842098
Alignment:
| Q |
215 |
cctgcaatgtattgatgatgagtatataacgcagcttgagtagtaaagtcttg |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
47842150 |
cctgcaatgtattgatgatgagtatataacgcagtttgagtagtaaagtcttg |
47842098 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 47842226 - 47842174
Alignment:
| Q |
220 |
aatgtattgatgatgagtatataacgcagcttgagtagtaaagtcttgtgcta |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
47842226 |
aatgtattgatgatgagtatataacgcagcttgagtagtaaaatcctgtgcta |
47842174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 47842288 - 47842228
Alignment:
| Q |
139 |
atcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcc |
199 |
Q |
| |
|
||||||||||| ||||||||| |||| |||||||| ||||||||||||| |||||||||| |
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|
| T |
47842288 |
atcctcattctattcgggattgcaatctcgaataaagaatatcgctccataagcaaaagcc |
47842228 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 41 - 528
Target Start/End: Original strand, 237958 - 238445
Alignment:
| Q |
41 |
acataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattcttgccaatacattat |
140 |
Q |
| |
|
|||||||| ||||| |||||||| || ||||| ||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
237958 |
acataaaggcccaaggtatggaatcctagaaagaggctagcccaacttaaatgagatatgatagcttctttatggtctaacattcttgccaatacattat |
238057 |
T |
|
| Q |
141 |
cctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaagcctgcaatgtattgatgatgagtata |
240 |
Q |
| |
|
||||||||||||| ||||| ||||| | ||| ||||| || |||||||||||||||||||||||||| || || || ||||| ||||| ||||||||||| |
|
|
| T |
238058 |
cctcattctgttccggattgtaatccctaatgaaaaaaatagctccatgagcaaaagcccctgtcatgatgaaccccgcaatatattggtgatgagtata |
238157 |
T |
|
| Q |
241 |
taacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgtgttgagctaccaaagaagtaatgacccctaatgaggct |
340 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||| ||||||||||| || |||||||| |||||||| || ||| |
|
|
| T |
238158 |
taaagcagcttgagtagtaaagtcttgtgctatgaatgcataaggaggtaaagagtacatatgttgagctactaaggaagtaataacccctaaagaagct |
238257 |
T |
|
| Q |
341 |
agagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgcttcta |
440 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| |||| ||||||||||||| |||| ||||||| |
|
|
| T |
238258 |
agagcaagacctaactgaaaatgaatcgaattgttgattgtgtcataaaggcccttatgcccacgccctaatcgaccccccggaggagtatgcgcttcta |
238357 |
T |
|
| Q |
441 |
aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg |
528 |
Q |
| |
|
||| ||||| |||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||| || |||||||||||||||||| |
|
|
| T |
238358 |
aaagatctttaatactgtgcccaattccgaagttagttcgatacatgtgaccggcaatgagaaaaataaatgcaatagctaaatgatg |
238445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 528
Target Start/End: Original strand, 240602 - 240669
Alignment:
| Q |
461 |
ccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg |
528 |
Q |
| |
|
|||||||| |||| || |||||||||||||| || || || |||||||| ||||||||||||||||| |
|
|
| T |
240602 |
ccaataccccagttggtcctatacatatgacctgcgattaggaaaagaatagcaatagctaaatgatg |
240669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 29 - 371
Target Start/End: Complemental strand, 10996673 - 10996334
Alignment:
| Q |
29 |
acatcatcatggacataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattcttg |
128 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10996673 |
acatcattatggacataaagtcccaaagtatggaaccctagaaataggatggctcaacttaaatgggatatgatagcttctttgtgctctaacatc--tg |
10996576 |
T |
|
| Q |
129 |
ccaatacattatcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaagcctgcaatgtattg |
228 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| ||||| | |||||||| ||||| ||||||||||||||| | |||||||||||| ||||||||| |||| |
|
|
| T |
10996575 |
ccaatacattattctcattatgttcgggattgtaatctcaaataaaaa-tatcgttccatgagcaaaagctcatgtcataataaatcctgcaatgaattg |
10996477 |
T |
|
| Q |
229 |
atgatgagtatataacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgtgttgagctaccaaagaagtaatgacc |
328 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10996476 |
atgatgagtatataccgcagcttgagctgtaaagtcttgcgctataaacgcataagtaggtaaagagtacatgtgttgagctaccaaagaagtaatgacc |
10996377 |
T |
|
| Q |
329 |
cctaatgaggctagagcaaggcctaattgaaaatgaattgaat |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10996376 |
cctaatgaggctagagcaaggcctaattgaaaatgaattgaat |
10996334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 3065875 - 3065837
Alignment:
| Q |
218 |
gcaatgtattgatgatgagtatataacgcagcttgagta |
256 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
3065875 |
gcaatgtattgatgatgactatataaggcagcttgagta |
3065837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 437 - 532
Target Start/End: Original strand, 18176963 - 18177058
Alignment:
| Q |
437 |
tctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt |
532 |
Q |
| |
|
|||||||| ||| |||||| || |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18176963 |
tctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt |
18177058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 18013446 - 18013484
Alignment:
| Q |
218 |
gcaatgtattgatgatgagtatataacgcagcttgagta |
256 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
18013446 |
gcaatgtattgatgatgactatataaggcagcttgagta |
18013484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 473 - 532
Target Start/End: Complemental strand, 39048001 - 39047942
Alignment:
| Q |
473 |
ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt |
532 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39048001 |
ttagttctatacatatgaccggtaatgagaaaaagaattgcaatagctaaatgatgatgt |
39047942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 441 - 529
Target Start/End: Original strand, 14541323 - 14541411
Alignment:
| Q |
441 |
aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatga |
529 |
Q |
| |
|
|||| |||||||||| || |||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14541323 |
aaatatcttttataccatgaccaatatcccagttagttttatacatatgaccgacaatgagaaaaagaattgcaatagcaaaatgatga |
14541411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 32566650 - 32566683
Alignment:
| Q |
296 |
tacatgtgttgagctaccaaagaagtaatgaccc |
329 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
32566650 |
tacatgtattgagctaccaaagaagtaatgaccc |
32566683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 473 - 532
Target Start/End: Complemental strand, 15723 - 15664
Alignment:
| Q |
473 |
ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt |
532 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
15723 |
ttagttctatacatatgactggcaatgtgaaaaagaattgcaatagctagatgatgatgt |
15664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 487 - 532
Target Start/End: Complemental strand, 39386308 - 39386263
Alignment:
| Q |
487 |
atgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt |
532 |
Q |
| |
|
|||||| |||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
39386308 |
atgaccggcaatgcgaaaaagaattacaatagctaaatgatgatgt |
39386263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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