View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_40 (Length: 338)
Name: NF0673_low_40
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 21 - 338
Target Start/End: Complemental strand, 22808804 - 22808485
Alignment:
| Q |
21 |
acatcatcaagtaagtcttatggaagcctcccatcctcaattggatcaagtgcaattgtgatggagcttctgctggaaatttagcttgt----ggggaat |
116 |
Q |
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| T |
22808804 |
acatcatcaaggaagtcttatgaaagcctcccatcctcaattggatcaagtgcaattgtgatggagcttctgctggaaatttagcttcttgtgggggaat |
22808705 |
T |
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| Q |
117 |
tttcagaaacaaagatgcgctttttcttggaggctttgctgaaggccctggtttaggaaactcttactttgcagaactatgtgatgcaatgagatctatt |
216 |
Q |
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| T |
22808704 |
tttcagaaacaaagatgcgctttttcttggaggctttgctgaaggccttggtttaggaaactcttactttgcagaactatgtggtgcaatgagatctatt |
22808605 |
T |
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| Q |
217 |
gaagtggccagatatcaaaaaactggagaaacttttggttggaatcagactctatgttgtttgttagagccttcaatgatgctagacttgttccttggag |
316 |
Q |
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| T |
22808604 |
gaagtggccag--atcaaaaaactgaagaaacctttggttggaatcagactctatgttggttgttagagccttcaatgatgctagacttgttccttggag |
22808507 |
T |
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| Q |
317 |
agtaagaaatagatggtccaac |
338 |
Q |
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| T |
22808506 |
agtcagaaatagatggtccaac |
22808485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 334
Target Start/End: Original strand, 9752265 - 9752561
Alignment:
| Q |
41 |
tggaagcctcccatcctcaattggatcaagtgcaattgtgatggagcttctgctggaaatttagcttgt----ggggaattttcagaa-acaaagatgcg |
135 |
Q |
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| T |
9752265 |
tggaaacctcccattctcaattggattaaatgtaattttgatggtgcttctgcaaggaacatagcttcttgtgggggaattttcagaggaaaaaaatgcc |
9752364 |
T |
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| Q |
136 |
ctttttcttggaggctttgctgaaggccctggtttaggaaactcttactttgcagaactatgtgatgcaatgagatctattgaagtggccagatatcaaa |
235 |
Q |
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| T |
9752365 |
ctttttctgggtgattttgttgaaggccttggtcttggaaactcttattttgctgagccttgtggagctataagatccattgatttggcagcata--aaa |
9752462 |
T |
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| Q |
236 |
aaactggagaaacttttggttggaatcagactctatgttgtttgttagagccttcaatgatgctagacttgttccttggagagtaagaaatagatggtc |
334 |
Q |
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| T |
9752463 |
aaactgaagtaatctttggttggaatttgattccatgttggttgttagagccttcaagaatgctagtcttgttccttggaggataagaaacagatggtc |
9752561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 13503089 - 13503222
Alignment:
| Q |
113 |
gaattttcagaaacaaagatgcgctttttcttggaggctttgctgaaggccctggtttaggaaactcttactttgcagaactatgtgatgcaatgagatc |
212 |
Q |
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||||||||| ||||||||| || |||||||||| || ||| |||||||| |||| | || || | | ||| |||||| || |||| |||||||| ||| |
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| T |
13503089 |
gaattttcataaacaaagaagctatttttcttgggggttttagtgaaggccttggtcttgggaattat-actctgcagagctttgtggtgcaatgaaatc |
13503187 |
T |
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| Q |
213 |
tattgaagtggccagatatcaaaaaactggagaaact |
249 |
Q |
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| T |
13503188 |
tattgaagtgg-cagat-tcaaaaaactggaaaaact |
13503222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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