View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_42 (Length: 335)
Name: NF0673_low_42
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 76 - 327
Target Start/End: Original strand, 24907769 - 24908020
Alignment:
| Q |
76 |
taaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgacatcgattttcatattttttgtgcttgat |
175 |
Q |
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| T |
24907769 |
taaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgacatcgattttcatattttttgtgcttgat |
24907868 |
T |
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| Q |
176 |
tacttgagatgacgatgaaatctcattcaaagaaccactcgtctttgcggaagcattccatctgtatattccaggctcagtcaatgccttctcattaaga |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24907869 |
tacttgagatgacgatgaaatctcattcaaagaaccactcgtctttgcggaagcattccatctgtatattccaggctcagtcaatgccttctcattaaga |
24907968 |
T |
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| Q |
276 |
tgaacttgtctggaaagcatttgtagaacttgtttcatggttggtctgtgct |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24907969 |
tgaacttgtctggaaagcatttgtagaacttgtttcatggttggtctgtgct |
24908020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 77 - 313
Target Start/End: Original strand, 24890069 - 24890303
Alignment:
| Q |
77 |
aaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgacatcgattttcatattttttgtgcttgatt |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24890069 |
aaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgatgtcgattttcatattttttgtgcttgatt |
24890168 |
T |
|
| Q |
177 |
acttgagatgacgatgaaatctcattcaaagaaccactcgtctttgcggaagcattccatctgtatattccaggctcagtcaatgccttctcattaagat |
276 |
Q |
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| T |
24890169 |
acttgagatgacgatgacatctcattcaaagaaccactcgtctttgcggaggcattctatttgtatattccatgctcagtcaatgccttctccata--at |
24890266 |
T |
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| Q |
277 |
gaacttgtctggaaagcatttgtagaacttgtttcat |
313 |
Q |
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|||||||| ||||||||||||||||||| |||||||| |
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| T |
24890267 |
gaacttgtttggaaagcatttgtagaacatgtttcat |
24890303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 38572391 - 38572434
Alignment:
| Q |
7 |
ctaacaagataccttctagatccttctagactaaggtgagtcat |
50 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
38572391 |
ctaacaagataccttctagatccttttagattaaggtgagtcat |
38572434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 42513242 - 42513285
Alignment:
| Q |
7 |
ctaacaagataccttctagatccttctagactaaggtgagtcat |
50 |
Q |
| |
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||||||| | |||||||||||||||||||| ||||||||||||| |
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| T |
42513242 |
ctaacaatagaccttctagatccttctagattaaggtgagtcat |
42513285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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