View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0673_low_46 (Length: 327)

Name: NF0673_low_46
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0673_low_46
NF0673_low_46
[»] chr8 (2 HSPs)
chr8 (1-153)||(16776103-16776255)
chr8 (216-281)||(16775975-16776040)
[»] chr1 (11 HSPs)
chr1 (1-153)||(2540984-2541136)
chr1 (1-152)||(47825521-47825672)
chr1 (1-146)||(47840327-47840472)
chr1 (1-151)||(47830238-47830388)
chr1 (27-148)||(48005573-48005694)
chr1 (216-281)||(47830109-47830174)
chr1 (43-151)||(34507046-34507154)
chr1 (43-136)||(33477908-33478001)
chr1 (217-282)||(47825385-47825450)
chr1 (42-135)||(33467853-33467944)
chr1 (216-282)||(2541197-2541263)
[»] chr2 (4 HSPs)
chr2 (1-150)||(11620427-11620576)
chr2 (44-89)||(33246769-33246814)
chr2 (222-261)||(11620653-11620692)
chr2 (44-90)||(33238848-33238894)
[»] chr3 (3 HSPs)
chr3 (1-150)||(20974142-20974291)
chr3 (7-146)||(20960243-20960382)
chr3 (45-153)||(30536298-30536406)
[»] scaffold0121 (1 HSPs)
scaffold0121 (27-133)||(35224-35327)
[»] chr5 (2 HSPs)
chr5 (44-94)||(22699981-22700031)
chr5 (32-114)||(22002425-22002507)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 16776255 - 16776103
Alignment:
Q  1 tcatcaaccaaatccttcgcaaacccaaatgtttccagcacaattttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatgagggga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||    
T  16776255 tcatcaaccaaatccttcgcaaacccaaatgtttccagcacaattttttcagaatcctatgttacaatctcatttgtttggttccaacaatatgagggga 16776156  T
Q  101 ggaggtggatatggaccctccagattcttttgatccgagcccttagatccacc 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16776155 ggaggtggatatggaccctccagattcttttgatccgagcccttagatccacc 16776103  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 16776040 - 16775975
Alignment:
Q  216 caagcacacatgcttaacctagtttcaagtatgtgaattggttaggatcgagtcttagtgttattg 281  Q
    ||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||    
T  16776040 caagcacacatgcttaacccagtttcatgtatgtgacttggttaggatcgagtcttagtgttattg 16775975  T

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Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 2540984 - 2541136
Alignment:
Q  1 tcatcaaccaaatccttcgcaaacccaaatgtttccagcacaattttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatgagggga 100  Q
    ||||||||||||||||  |||||| |||||||||||||||||| |||||||||||| |||||||||| ||||| ||||||||| |||||||||| |||||    
T  2540984 tcatcaaccaaatcctcggcaaactcaaatgtttccagcacaactttttcagaaccctatgttgcaacctcatctgtttggtttcaacaatatgggggga 2541083  T
Q  101 ggaggtggatatggaccctccagattcttttgatccgagcccttagatccacc 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2541084 ggaggtggatatggaccctccagattcttttgatccgagcccttagatccacc 2541136  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 47825672 - 47825521
Alignment:
Q  1 tcatcaaccaaatccttcgcaaacccaaatgtttccagcacaattttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatgagggga 100  Q
    ||||||| |||||||| ||||||| |||||||||||| |||| |||||||| ||||  ||||||||| ||||||||||||| | ||||||| ||||||||    
T  47825672 tcatcaatcaaatcctccgcaaactcaaatgtttccaacacagttttttcaaaaccccatgttgcaacctcatttgtttgggttcaacaatgtgagggga 47825573  T
Q  101 ggaggtggatatggaccctccagattcttttgatccgagcccttagatccac 152  Q
    ||||| ||||||||||||| |||||||||||||||||||||||| |||||||    
T  47825572 ggaggcggatatggacccttcagattcttttgatccgagcccttggatccac 47825521  T

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Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 47840472 - 47840327
Alignment:
Q  1 tcatcaaccaaatccttcgcaaacccaaatgtttccagcacaattttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatgagggga 100  Q
    |||||||||||||||| | ||  | ||||||| |||| |||| ||||||||||||| |||||||||| ||||||||||||| | |||||||||| |||||    
T  47840472 tcatcaaccaaatcctccacaggctcaaatgtatccaacacagttttttcagaaccctatgttgcaacctcatttgtttggcttcaacaatatgggggga 47840373  T
Q  101 ggaggtggatatggaccctccagattcttttgatccgagcccttag 146  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||    
T  47840372 ggaggtggatatggaccctccggattcttttgatccgggcccttag 47840327  T

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Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 47830388 - 47830238
Alignment:
Q  1 tcatcaaccaaatccttcgcaaacccaaatgtttccagcacaattttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatgagggga 100  Q
    |||||||||||||||| ||||||| |||||||||||| |||| | ||||||||| | |||||||||| |||| |||||||| | |||||||||| |||||    
T  47830388 tcatcaaccaaatcctccgcaaactcaaatgtttccaacacagtattttcagaatcctatgttgcaacctcagttgtttggcttcaacaatatgggggga 47830289  T
Q  101 ggaggtggatatggaccctccagattcttttgatccgagcccttagatcca 151  Q
     | |||||||||||||||||  |||||||||||| ||||||||||||||||    
T  47830288 aggggtggatatggaccctctggattcttttgatacgagcccttagatcca 47830238  T

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Target: chr1; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 48005573 - 48005694
Alignment:
Q  27 aaatgtttccagcacaattttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatgaggggaggaggtggatatggaccctccagatt 126  Q
    |||||||||||||||| |||||| | |||| |||| ||||| ||||||||||||| | |||||||||  | ||||||||||||||||||||||||| |||    
T  48005573 aaatgtttccagcacagttttttgataaccctatgctgcaacctcatttgtttggcttcaacaatattggaggaggaggtggatatggaccctccaaatt 48005672  T
Q  127 cttttgatccgagcccttagat 148  Q
    ||||||||||||||||||||||    
T  48005673 cttttgatccgagcccttagat 48005694  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 47830174 - 47830109
Alignment:
Q  216 caagcacacatgcttaacctagtttcaagtatgtgaattggttaggatcgagtcttagtgttattg 281  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||    
T  47830174 caagcacacatgcttaacctagtttcatgtatgtgacttggttaggactgagtcttagtgttattg 47830109  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 34507046 - 34507154
Alignment:
Q  43 attttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatgaggggaggaggtggatatggaccctccagattcttttgatccgagccc 142  Q
    |||||||||||||| |||||||||| ||||||||||||||| |||||||||  | ||||  |||||| |||| |||||| ||| || ||||||| |||||    
T  34507046 attttttcagaaccctatgttgcaacctcatttgtttggtttcaacaatataggaggagatggtggacatggtccctccggatgctattgatccaagccc 34507145  T
Q  143 ttagatcca 151  Q
     ||||||||    
T  34507146 atagatcca 34507154  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 33477908 - 33478001
Alignment:
Q  43 attttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatgaggggaggaggtggatatggaccctccagattcttttgatcc 136  Q
    ||||| |||||| | |||||||||| ||||||||||||||| |||||||||| | ||||  |||||| |||| |||||| |||||| |||||||    
T  33477908 attttgtcagaatcctatgttgcaacctcatttgtttggtttcaacaatatgggaggagatggtggacatggtccctccggattctattgatcc 33478001  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 47825450 - 47825385
Alignment:
Q  217 aagcacacatgcttaacctagtttcaagtatgtgaattggttaggatcgagtcttagtgttattgg 282  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||   | |||||||||||||||    
T  47825450 aagcacacatgcttaacctagtttcatgtatgtgacttggttaggactaaatcttagtgttattgg 47825385  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 33467853 - 33467944
Alignment:
Q  42 aattttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatgaggggaggaggtggatatggaccctccagattcttttgatc 135  Q
    |||||||||| |||| |||||||||| ||| ||||||||||| |||||||||| | ||||  |||||| |||| |||||| |||||| ||||||    
T  33467853 aattttttcaaaaccctatgttgcaacctcttttgtttggtttcaacaatatgggaggag--ggtggacatggtccctccggattctattgatc 33467944  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 2541197 - 2541263
Alignment:
Q  216 caagcacacatgcttaacctagtttcaagtatgtgaattggttaggatcgagtcttagtgttattgg 282  Q
    |||||||||| |||||||||||||||| |||||||| |||||||| |  ||||||| || |||||||    
T  2541197 caagcacacaagcttaacctagtttcacgtatgtgacttggttagcactgagtcttggtcttattgg 2541263  T

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Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 11620427 - 11620576
Alignment:
Q  1 tcatcaaccaaatccttcgcaaacccaaatgtttccagcacaattttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatgagggga 100  Q
    |||||||||||||||| | ||| | || |||||||||||||| |||| ||||||||  ||||||||| ||||||| ||||| | |||||| ||| |||||    
T  11620427 tcatcaaccaaatcctccacaagctcatatgtttccagcacagttttatcagaacccaatgttgcaacctcatttatttggcttcaacaacatgggggga 11620526  T
Q  101 ggaggtggatatggaccctccagattcttttgatccgagcccttagatcc 150  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11620527 ggaggtggatatggaccctccagattcttttgatcggagcccttagatcc 11620576  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 33246769 - 33246814
Alignment:
Q  44 ttttttcagaaccatatgttgcaatctcatttgtttggttccaaca 89  Q
    |||||||| ||||||||||||||| ||||||||||||||| |||||    
T  33246769 ttttttcataaccatatgttgcaacctcatttgtttggtttcaaca 33246814  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 261
Target Start/End: Original strand, 11620653 - 11620692
Alignment:
Q  222 cacatgcttaacctagtttcaagtatgtgaattggttagg 261  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  11620653 cacatgcttaacctagtttcatgtatgtgacttggttagg 11620692  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 33238848 - 33238894
Alignment:
Q  44 ttttttcagaaccatatgttgcaatctcatttgtttggttccaacaa 90  Q
    |||||||| | ||||||||||||| ||||||||||||||| ||||||    
T  33238848 ttttttcatacccatatgttgcaacctcatttgtttggtttcaacaa 33238894  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 20974142 - 20974291
Alignment:
Q  1 tcatcaaccaaatccttcgcaaacccaaatgtttccagcacaattttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatgagggga 100  Q
    |||||||| ||||||| | ||| | || ||| |||||||||| |||| |||||||| |||||||||| ||||||||||||| | |||||||||  |||||    
T  20974142 tcatcaactaaatcctccacaagctcagatgcttccagcacagttttatcagaaccctatgttgcaacctcatttgtttggcttcaacaatataggggga 20974241  T
Q  101 ggaggtggatatggaccctccagattcttttgatccgagcccttagatcc 150  Q
    ||||||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  20974242 ggaggtggaaatggaccctcctgattcttttgatcagagcccttagatcc 20974291  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 20960243 - 20960382
Alignment:
Q  7 accaaatccttcgcaaacccaaatgtttccagcacaattttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatgaggggaggaggt 106  Q
    |||||||||| | ||| | || ||| |||||||| | |||| ||| |||| |||||||||| | ||||||||||| | |||||||||| |||||||||||    
T  20960243 accaaatcctccacaagctcagatgcttccagcagagttttatcaaaaccctatgttgcaaccacatttgtttggcttcaacaatatggggggaggaggt 20960342  T
Q  107 ggatatggaccctccagattcttttgatccgagcccttag 146  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  20960343 ggatacggaccctccggattcttttgatccgagcccttag 20960382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 30536406 - 30536298
Alignment:
Q  45 tttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatgaggggaggaggtggatatggaccctccagattcttttgatccgagccctt 144  Q
    |||||||||||| |||||||||| ||||||||||||| | |||||||||| | |||| ||||||| |||| |||    | ||||||||||||||||||||    
T  30536406 tttttcagaaccctatgttgcaacctcatttgtttggcttcaacaatatgggaggagaaggtggacatggtccccatgggttcttttgatccgagccctt 30536307  T
Q  145 agatccacc 153  Q
    |||||||||    
T  30536306 agatccacc 30536298  T

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Target: scaffold0121 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 35224 - 35327
Alignment:
Q  27 aaatgtttccagcacaattttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatgaggggaggaggtggatatggaccctccagatt 126  Q
    ||||||||||| |||||||||||||  ||| ||| |||||||||||||||||||| | |||||||||||   ||| ||| |||||||||||| |||||||    
T  35224 aaatgtttccaccacaattttttcattaccctatattgcaatctcatttgtttggcttcaacaatatga---gagaaggaggatatggaccccccagatt 35320  T
Q  127 cttttga 133  Q
    || ||||    
T  35321 ctattga 35327  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 22700031 - 22699981
Alignment:
Q  44 ttttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatg 94  Q
    ||||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  22700031 ttttttcagaaccctatgttgcaacctcatttgtttggtttcaacaatatg 22699981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 22002425 - 22002507
Alignment:
Q  32 tttccagcacaattttttcagaaccatatgttgcaatctcatttgtttggttccaacaatatgaggggaggaggtggatatgg 114  Q
    ||||| ||| ||||| ||||||||| |||||||||| | ||||||||||| | |||||||||| | |||| ||||||| ||||    
T  22002425 tttccggcagaatttattcagaaccctatgttgcaaccacatttgtttggcttcaacaatatgggaggagaaggtggacatgg 22002507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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