View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0673_low_5 (Length: 581)
Name: NF0673_low_5
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 9 - 552
Target Start/End: Original strand, 52998316 - 52998862
Alignment:
| Q |
9 |
caacaaaattaattaatattgggggcggaatatatgcacatgcagtactactcctcatatatatcccacatttagaatgcatattataagagataaggga |
108 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52998316 |
caacaaaattaattaatattgggtgcggaatatatgcacatgcagtactactcctcat------cccacatttagaatgcatattataagagataaggga |
52998409 |
T |
|
| Q |
109 |
ttggctgcatacaatgtggtcctcgttctatctacaatatattata------tagagatatagcagaatgatagtcatattcagatataaattttggtcg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52998410 |
ttggctgcatacaatgtggtcctcgttctatctgcaatatattatatatatatagagatatagcagaatgatagtcatattcagatataaattttggtcg |
52998509 |
T |
|
| Q |
203 |
ataaaatattaattggtagagaatcatattgatatggaggattggtatttctatctgcagaattaactactagctagttagacatttttgtttttcattc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52998510 |
ataaaatattaattggtagagaatcatattgatatggaggattggtatttctatctgcagaattaactactagctagttagacatttttgtttttcattc |
52998609 |
T |
|
| Q |
303 |
aattcccatgttctaaggtcaatattaatcccaaatatatacaatctcatcatgtagctaatgcaaccgcgtcttgttctttgttcttctcttcctctca |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52998610 |
aattcccatgttctaaggtcaatattaatcccaaatatatacaatctcatcatgtacctaatgcaaccgcgtcttgttctttgttcttctcttcctctca |
52998709 |
T |
|
| Q |
403 |
ttgcatttatactagcattaatta---aactttgattctcaatcactaatttattacatacatattttcatatctcataatcaaccagtaccctagttgt |
499 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52998710 |
ttgcatttatactagcattaattaatgaactttgattctcaatcactaatttattacatacatattttcatatctcataatcaaccagtaccctagttgt |
52998809 |
T |
|
| Q |
500 |
acgtacatgtacatgtgtgtatgtctatgaaaaggcatagcatgtgatgatct |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52998810 |
acgtacatgtacatgtgtgtatgtctatgaaaaggcatagcatgtgataatct |
52998862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1158 times since January 2019
Visitors: 4365