View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_53 (Length: 317)
Name: NF0673_low_53
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 141 - 287
Target Start/End: Original strand, 14812310 - 14812456
Alignment:
| Q |
141 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
240 |
Q |
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| T |
14812310 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat |
14812409 |
T |
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| Q |
241 |
ccataaccattatctctaatagtgcaaatttgtatccacatattctt |
287 |
Q |
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| T |
14812410 |
ccataaccattatctctaatagtgcaaatttgtaaccacatactctt |
14812456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 141 - 287
Target Start/End: Original strand, 15259305 - 15259451
Alignment:
| Q |
141 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
240 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15259305 |
gaacctgtggtcagaacctgaaaatttagttttggatcatctccttgcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat |
15259404 |
T |
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| Q |
241 |
ccataaccattatctctaatagtgcaaatttgtatccacatattctt |
287 |
Q |
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| T |
15259405 |
ccataaccattatctctaatagtgcaaatttgtaaccacatactctt |
15259451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 141 - 260
Target Start/End: Original strand, 14804890 - 14805009
Alignment:
| Q |
141 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
240 |
Q |
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| T |
14804890 |
gaacctgtggtcaaaacgtgaacacttagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtat |
14804989 |
T |
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| Q |
241 |
ccataaccattatctctaat |
260 |
Q |
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| T |
14804990 |
cagcaaccattgtctctaat |
14805009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 141 - 260
Target Start/End: Original strand, 15251884 - 15252003
Alignment:
| Q |
141 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
240 |
Q |
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||||||||||||| ||| |||| | ||||||| |||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| |
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| T |
15251884 |
gaacctgtggtcaaaacgtgaacacttagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtat |
15251983 |
T |
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| Q |
241 |
ccataaccattatctctaat |
260 |
Q |
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| T |
15251984 |
cagcaaccattgtctctaat |
15252003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 141 - 287
Target Start/End: Complemental strand, 17521870 - 17521724
Alignment:
| Q |
141 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
240 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17521870 |
gaacctgtggtcagaacctgaaaacttagttttggatcatcacctcgctcagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat |
17521771 |
T |
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| Q |
241 |
ccataaccattatctctaatagtgcaaatttgtatccacatattctt |
287 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
17521770 |
ccataaccattatctctaatagtgcaaatttgtaaccacatactctt |
17521724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 3479737 - 3479834
Alignment:
| Q |
30 |
attaagttctgtttcctttgctttctgaactgcaatttcttcccttagctttgccattctttctctttttctcacctgcaattgtttttcgaaattat |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
3479737 |
attaagttctgtttcctttgctttctgaactgcaatttcttcccttagctttgccattttttctctttttctcacctgcaattgtttttcaaaattat |
3479834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 3455372 - 3455459
Alignment:
| Q |
30 |
attaagttctgtttcctttgctttctgaactgcaatttcttcccttagctttgccattctttctctttttctcacctgcaattgtttt |
117 |
Q |
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| T |
3455372 |
attaagttctgtttcctttgctttctgaactgcaatttcttcccttagctttgccattctttctctttttctcacctgcgattttttt |
3455459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 48695037 - 48694965
Alignment:
| Q |
34 |
agttctgtttcctttgctttctgaactgcaatttcttcccttagctttgccattctttctctttttctcacct |
106 |
Q |
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|||||||||||||||||||||||||| ||||| ||||| | | ||| ||||| |||||||||||||| |||| |
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| T |
48695037 |
agttctgtttcctttgctttctgaacagcaatctcttcgcgaatcttcgccatcctttctctttttctaacct |
48694965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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