View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0673_low_56 (Length: 310)

Name: NF0673_low_56
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0673_low_56
NF0673_low_56
[»] chr2 (1 HSPs)
chr2 (66-280)||(16068006-16068220)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 66 - 280
Target Start/End: Complemental strand, 16068220 - 16068006
Alignment:
Q  66 aatatgaatgaataaaaaatgaaccctagaaatgaagagggggttttccatggagtttagctcaacaccaagtaacatactatatcaaaaaccaaaccaa 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16068220 aatatgaatgaataaaaaatgaaccctagaaatgaagagggggttttccatggagtttagctcaacaccaagtaacatactatatcaaaaaccaaaccaa 16068121  T
Q  166 tcaagtaacgaagaaatagaaagttaaggtatatgtgggagaaatgatgggtacgccaacattcttaataggttaaaacatgcatgaccatttgacacaa 265  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16068120 tcaagtaacgaagaaatagaaagttaaggtacatgtgggagaaatgatgggtacgccaacattcttaataggttaaaacatgcatgaccatttgacacaa 16068021  T
Q  266 taaataaagagctaa 280  Q
    |||||||||||||||    
T  16068020 taaataaagagctaa 16068006  T

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