View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0673_low_59 (Length: 306)
Name: NF0673_low_59
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_59 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 69 - 306
Target Start/End: Complemental strand, 10893256 - 10893019
Alignment:
| Q |
69 |
tgagatggacatcatcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagctggaatagtttaaagaggaag |
168 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
10893256 |
tgagatgaacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
10893157 |
T |
|
| Q |
169 |
cgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10893156 |
cgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga |
10893057 |
T |
|
| Q |
269 |
gcagtttatttagaactttgaaaattcaaaaaagcaca |
306 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10893056 |
gcagtttatttagaactttgaaaattgaaaaaagcaca |
10893019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 69 - 268
Target Start/End: Complemental strand, 8865643 - 8865444
Alignment:
| Q |
69 |
tgagatggacatcatcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagctggaatagtttaaagaggaag |
168 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
8865643 |
tgagatgaacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
8865544 |
T |
|
| Q |
169 |
cgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8865543 |
cgaaagatatacaaccacataataaaattatttataccaaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga |
8865444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 69 - 268
Target Start/End: Original strand, 11127114 - 11127314
Alignment:
| Q |
69 |
tgagatggacatcatcaagcaacctacacaacaagaa-gcaagtatgagtccaggaaaaggaaaagtgcagcggcggagctggaatagtttaaagaggaa |
167 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |
|
|
| T |
11127114 |
tgagatgaacatcagcaagcaacctacacaacaagaaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgatgaa |
11127213 |
T |
|
| Q |
168 |
gcgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctag |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11127214 |
gcgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctag |
11127313 |
T |
|
| Q |
268 |
a |
268 |
Q |
| |
|
| |
|
|
| T |
11127314 |
a |
11127314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 11155989 - 11156158
Alignment:
| Q |
69 |
tgagatggacatcatcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagctggaatagtttaaagaggaag |
168 |
Q |
| |
|
||||||| |||||| |||||||||| ||||||||||| |||||||||| |||||||||| |||| |||| || ||| || ||||| ||| | ||||||| |
|
|
| T |
11155989 |
tgagatgaacatcaacaagcaacctgcacaacaagaaacaagtatgaggccaggaaaagcgaaagagcagtggtggaacttgaataattttacgaggaag |
11156088 |
T |
|
| Q |
169 |
cgaaagatatacaaccacataataaaattatt--tatactgaatatgtaataaaatgaatgttacaacac |
236 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11156089 |
tgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacac |
11156158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 11144811 - 11144983
Alignment:
| Q |
69 |
tgagatggacatcatcaagcaacctacacaacaagaagcaagtat---gagtccaggaaaaggaaaagtgcagcggcggagctggaatagtttaaagagg |
165 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||||||| |||||||||||||| |||| |||| |||||| || ||||| ||| | |||| |
|
|
| T |
11144811 |
tgagatgaacatcagcaagcaacctacaccacaagaagcaagtattatgagtccaggaaaagcgaaagagcagtggcggaacttgaataattttacgagg |
11144910 |
T |
|
| Q |
166 |
aagcgaaagatatacaaccacataataaaattatt--tatactgaatatgtaataaaatgaatgttacaacac |
236 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11144911 |
aagtgaaagatatacaaccgcataataaaattatttatataccaaatatgtaataaaatgaatgttacaacac |
11144983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 8865388 - 8865350
Alignment:
| Q |
268 |
agcagtttatttagaactttgaaaattcaaaaaagcaca |
306 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8865388 |
agcagtttatttagaactttgaaaattgaaaaaagcaca |
8865350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 11127370 - 11127408
Alignment:
| Q |
268 |
agcagtttatttagaactttgaaaattcaaaaaagcaca |
306 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11127370 |
agcagtttatttagaactttgaaaattgaaaaaagcaca |
11127408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 140 times since January 2019
Visitors: 4370