View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_6 (Length: 537)
Name: NF0673_low_6
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 38 - 532
Target Start/End: Complemental strand, 30225470 - 30224976
Alignment:
| Q |
38 |
ctccgagatatccacaaaaaattaattgcaaaatacataagaaggatccaggaattacgattagtggggataagattatatatgttatttactacaaata |
137 |
Q |
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| T |
30225470 |
ctccgagatatccacaaaaaattaattgcaaaatacatatgaaggatccaggaattacgattagtggggataagattatatatgttatttactacaaata |
30225371 |
T |
|
| Q |
138 |
ttcctctttgcatttttgaagttttctttaggaaatatgcatggtctgatctgaaacatagattttcttatacatactttgtatttatattattgttatt |
237 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30225370 |
ttcctctttgcatttttaaagttttctttaggaaatatgcatggtctgatctgaaacatagattttcttatacatactttgtatttatattattgttatt |
30225271 |
T |
|
| Q |
238 |
ttcttgcactgcannnnnnnnnnctattcaccatgattttatattattagctgttataaccctgtctggcttacgatagttcaaatattatttcttcttg |
337 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30225270 |
ttcttgcactgcattttttttttctattcaccatgattttatattattagctgttataatcctgtctggcttacgatagttcaaatattatttcttcttg |
30225171 |
T |
|
| Q |
338 |
cccactacactttatcaagctagtgtaagtgtaaccctaatctttttaactaaccaatctatttatattcctaataactcaaggttatgttcttcattgg |
437 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30225170 |
cccactgcactttatcaagctagtgtaagtgtaaccctaatctttttaactaaccaatctatttatattcctaataactcaaggttatgttcttcattgg |
30225071 |
T |
|
| Q |
438 |
tcgtctagggcgaacacctttatcttcaccaaagctcacctgagaagtggatacgacctttgattttgattttttctttggtgtcctatgatact |
532 |
Q |
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|||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
30225070 |
tcgtctgggacgaacacctttatcttcaccaaagctcacttgagaagtggatacgacctttgattttgatttgttctttggtgtcctaggatact |
30224976 |
T |
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