View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0673_low_60 (Length: 306)
Name: NF0673_low_60
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_60 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 7954094 - 7953789
Alignment:
| Q |
2 |
gaggaggagcagagacttcgagttgagccaagttacgtaagaagtaaccggtaaaggcgtggcagcaaaggtaagtgtaaggaactcctttagcttcaat |
101 |
Q |
| |
|
|||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7954094 |
gaggaggatcagtgacgtcgagttgagccaagttacgtaagaagtaaccggtaaaggcgtggcaacaaaggtaagtgtaaggaactccttcagcttcaat |
7953995 |
T |
|
| Q |
102 |
tactcttcggatactcgctttttcttcaaaaacttgtctaactggctcaactgcctcgtgacggtccacgtctagcccaaattcggatgggaaaaatttc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7953994 |
tactcttcggatactcgctttttcttcaaaaacttgtctaactggctcaactgcctcgtgacggtccacgtctagcccaaattcggatgggaaaaatttc |
7953895 |
T |
|
| Q |
202 |
tgtagacacaagaaatttaataccaatattcaatataacgagcacaaatctaaccatcaaaggatgtattac-taagagtctatctgaattgacttattt |
300 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||| ||| ||| | |||||||||||| |
|
|
| T |
7953894 |
tgtagacacaagaaatttagtaccaacattcaatataacaagccgaaatctaaccagcaaaggagctattacttaatagtttatttagattgacttattt |
7953795 |
T |
|
| Q |
301 |
gaactt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
7953794 |
gaactt |
7953789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 7966974 - 7966669
Alignment:
| Q |
2 |
gaggaggagcagagacttcgagttgagccaagttacgtaagaagtaaccggtaaaggcgtggcagcaaaggtaagtgtaaggaactcctttagcttcaat |
101 |
Q |
| |
|
|||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7966974 |
gaggaggatcagtgacgtcgagttgagccaagttacgtaagaagtaaccggtaaaggcgtggcaacaaaggtaagtgtaaggaactccttcagcttcaat |
7966875 |
T |
|
| Q |
102 |
tactcttcggatactcgctttttcttcaaaaacttgtctaactggctcaactgcctcgtgacggtccacgtctagcccaaattcggatgggaaaaatttc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7966874 |
tactcttcggatactcgctttttcttcaaaaacttgtctaactggctcaactgcctcgtgacggtccacgtctagcccaaattcggatgggaaaaatttc |
7966775 |
T |
|
| Q |
202 |
tgtagacacaagaaatttaataccaatattcaatataacgagcacaaatctaaccatcaaaggatgtattac-taagagtctatctgaattgacttattt |
300 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||| ||| ||| | |||||||||||| |
|
|
| T |
7966774 |
tgtagacacaagaaatttagtaccaacattcaatataacaagccgaaatctaaccagcaaaggagctattacttaatagtttatttagattgacttattt |
7966675 |
T |
|
| Q |
301 |
gaactt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
7966674 |
gaactt |
7966669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 670 times since January 2019
Visitors: 4390