View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_64 (Length: 294)
Name: NF0673_low_64
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_64 |
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| [»] scaffold0199 (1 HSPs) |
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| [»] scaffold0288 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 1283201 - 1282971
Alignment:
| Q |
1 |
cttcatatcattgtaaagatcaccaaattaataattgagttacgtgaacgtatttccnnnnnnnagaacctcctagatttgatctgtttggaccacttcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| ||||| |
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| T |
1283201 |
cttcatatcattgtaaagatcaccaaattaataattgagttacgtgaacgtatttcctttttttagaacctcctagattttatctgtttgaacctcttcc |
1283102 |
T |
|
| Q |
101 |
ttttttgttctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
1283101 |
ttttttgttctctattaaagcacatgcttatcacttgtttctcaacctcatatcttgcacgcataacatccaagtagagaattatcaaaaatggtcaact |
1283002 |
T |
|
| Q |
201 |
ttgcaaacacaaaaccacatgctgtgatgat |
231 |
Q |
| |
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|||||||||||||||||||||||||| |||| |
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| T |
1283001 |
ttgcaaacacaaaaccacatgctgtgttgat |
1282971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 1418 - 1301
Alignment:
| Q |
109 |
tctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaaactttgcaaac |
208 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |
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| T |
1418 |
tctctattaaagcacatgcttatcacttgtttctcaacctcatatcttgcacacataacatccaaatagataattatcaaaaatgggaaactttgcaaac |
1319 |
T |
|
| Q |
209 |
acaaaaccacatgctgtg |
226 |
Q |
| |
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| |||| ||||||||||| |
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| T |
1318 |
agaaaatcacatgctgtg |
1301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 1676181 - 1676064
Alignment:
| Q |
109 |
tctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaaactttgcaaac |
208 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |
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| T |
1676181 |
tctctattaaagcacatgcttatcacttgtttctcaacctcatatcttgcacacataacatccaaatagataattatcaaaaatgggaaactttgcaaac |
1676082 |
T |
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| Q |
209 |
acaaaaccacatgctgtg |
226 |
Q |
| |
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| |||| ||||||||||| |
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| T |
1676081 |
agaaaatcacatgctgtg |
1676064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 1908 - 2041
Alignment:
| Q |
98 |
tccttttttgttctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaa |
197 |
Q |
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||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| || | ||||||||||||||||| || |
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| T |
1908 |
tccttttttttcttctattaaagcacatgcttatcacttgtttctcaacctcataacttgcaaacataacatcaaaagatagaattatcaaaaatgggaa |
2007 |
T |
|
| Q |
198 |
actttgcaaacacaaaaccacatgctgtgatgat |
231 |
Q |
| |
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| T |
2008 |
actttgcaaacagaaaaccacatgttgtgatgat |
2041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 4618972 - 4618839
Alignment:
| Q |
98 |
tccttttttgttctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaa |
197 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| || | ||||||||||||||||| || |
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| T |
4618972 |
tccttttttttcttctattaaagcacatgcttatcacttgtttctcaacctcataacttgcaaacataacatcaaaagatagaattatcaaaaatgggaa |
4618873 |
T |
|
| Q |
198 |
actttgcaaacacaaaaccacatgctgtgatgat |
231 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||| |
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| T |
4618872 |
actttgcaaacagaaaaccacatgttgtgatgat |
4618839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 4594683 - 4594548
Alignment:
| Q |
101 |
ttttttgttctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacat------aacatccaagtagagaattatcaaaaatgg |
194 |
Q |
| |
|
|||||| |||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||| ||||| ||| ||||||||||||||| |||| |
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| T |
4594683 |
tttttttttctctattaaagcccatgtttatcacttgtttctcaacctcgtatcttgcacacataacaataacattcaa-tagagaattatcaaagatgg |
4594585 |
T |
|
| Q |
195 |
taaactttgcaaacacaaaaccacatgctgtgatgat |
231 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| |
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| T |
4594584 |
gaaactttgcaaacagaaaaccacatgctgtgttgat |
4594548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 4603773 - 4603648
Alignment:
| Q |
109 |
tctctattaaagcacatgcttat---cacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaaactttgca |
205 |
Q |
| |
|
|||||||||| |||||||||||| ||||| || |||||||||||| |||||||||||| |||||| |||| ||||| | ||||||| |||||||||| |
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|
| T |
4603773 |
tctctattaatgcacatgcttattatcacttgttcttcaacctcatattttgcacacataatatccaaatagaaaattaactaaaatgggaaactttgca |
4603674 |
T |
|
| Q |
206 |
aacacaaaaccacatgctgtgatgat |
231 |
Q |
| |
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|||| ||||| |||||||||| |||| |
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|
| T |
4603673 |
aacagaaaacaacatgctgtgttgat |
4603648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 4565689 - 4565567
Alignment:
| Q |
109 |
tctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaaactttgcaaac |
208 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||| |||||||||||||||||||| ||||||| ||| ||| || | ||||| |||| || ||||||||| |
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|
| T |
4565689 |
tctctataaaagcacatgcctatcacttgtttttcaacctcatatcttgcacaaataacatacaaacagaaaaatttcaaagatgggaagttttgcaaac |
4565590 |
T |
|
| Q |
209 |
acaaaaccacatgctgtgatgat |
231 |
Q |
| |
|
| |||||||||||||||| |||| |
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|
| T |
4565589 |
agaaaaccacatgctgtgttgat |
4565567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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