View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0673_low_7 (Length: 520)

Name: NF0673_low_7
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0673_low_7
NF0673_low_7
[»] chr7 (35 HSPs)
chr7 (235-447)||(10899266-10899476)
chr7 (21-155)||(10899052-10899186)
chr7 (55-158)||(48646056-48646159)
chr7 (21-158)||(7258282-7258419)
chr7 (61-158)||(44333146-44333243)
chr7 (54-158)||(35727706-35727810)
chr7 (49-158)||(48788679-48788788)
chr7 (21-158)||(43457464-43457601)
chr7 (46-158)||(44334453-44334565)
chr7 (49-158)||(48777263-48777372)
chr7 (21-158)||(35729065-35729202)
chr7 (21-104)||(7259663-7259746)
chr7 (55-149)||(8374930-8375024)
chr7 (54-136)||(13578332-13578414)
chr7 (443-496)||(10899622-10899675)
chr7 (57-158)||(45583691-45583792)
chr7 (49-153)||(42477393-42477496)
chr7 (58-158)||(46286510-46286610)
chr7 (23-158)||(48647424-48647559)
chr7 (49-158)||(30925015-30925124)
chr7 (50-158)||(12223707-12223815)
chr7 (21-104)||(45584475-45584558)
chr7 (54-158)||(39708110-39708214)
chr7 (65-158)||(21062824-21062917)
chr7 (55-104)||(44530624-44530673)
chr7 (54-158)||(8375595-8375699)
chr7 (58-145)||(8048800-8048887)
chr7 (49-104)||(33607630-33607685)
chr7 (49-104)||(44529089-44529144)
chr7 (21-83)||(5930112-5930174)
chr7 (55-150)||(24844588-24844683)
chr7 (49-104)||(34888930-34888985)
chr7 (49-104)||(43461735-43461789)
chr7 (55-104)||(12220084-12220133)
chr7 (55-104)||(32793232-32793281)
[»] chr8 (18 HSPs)
chr8 (49-158)||(35178811-35178920)
chr8 (21-158)||(32898424-32898561)
chr8 (21-158)||(35177402-35177539)
chr8 (55-146)||(45476181-45476272)
chr8 (21-158)||(1952949-1953085)
chr8 (21-158)||(10407563-10407700)
chr8 (57-146)||(41754810-41754899)
chr8 (66-158)||(41754005-41754097)
chr8 (49-104)||(5965449-5965504)
chr8 (49-158)||(31075297-31075405)
chr8 (52-108)||(5736899-5736955)
chr8 (55-158)||(5738036-5738139)
chr8 (51-102)||(10406269-10406320)
chr8 (46-100)||(12637762-12637816)
chr8 (46-104)||(28619549-28619607)
chr8 (55-104)||(28619050-28619099)
chr8 (123-156)||(43539881-43539914)
chr8 (55-95)||(45476576-45476616)
[»] chr2 (29 HSPs)
chr2 (49-158)||(31091534-31091643)
chr2 (49-158)||(32766246-32766355)
chr2 (46-158)||(24459450-24459562)
chr2 (49-158)||(32764945-32765054)
chr2 (56-158)||(34037687-34037789)
chr2 (23-158)||(40000315-40000450)
chr2 (49-158)||(31090171-31090280)
chr2 (21-154)||(17330209-17330342)
chr2 (53-158)||(5915003-5915108)
chr2 (49-122)||(14704049-14704122)
chr2 (21-104)||(7073700-7073783)
chr2 (55-144)||(17466841-17466930)
chr2 (21-138)||(2910127-2910244)
chr2 (55-158)||(24458067-24458170)
chr2 (56-158)||(2911505-2911607)
chr2 (49-158)||(34582677-34582786)
chr2 (56-157)||(39015013-39015114)
chr2 (55-106)||(38985002-38985053)
chr2 (21-142)||(31814323-31814442)
chr2 (49-158)||(38853762-38853871)
chr2 (54-158)||(12746213-12746317)
chr2 (56-104)||(21733785-21733833)
chr2 (57-145)||(5914324-5914412)
chr2 (49-104)||(17466102-17466157)
chr2 (49-104)||(39016390-39016441)
chr2 (117-158)||(14705122-14705163)
chr2 (50-158)||(38854796-38854904)
chr2 (46-104)||(7412153-7412211)
chr2 (49-78)||(37607189-37607218)
[»] chr5 (27 HSPs)
chr5 (53-158)||(28591125-28591230)
chr5 (49-158)||(2464676-2464785)
chr5 (49-158)||(2466781-2466890)
chr5 (49-158)||(8074458-8074567)
chr5 (21-158)||(4592868-4593005)
chr5 (50-158)||(9538057-9538165)
chr5 (49-138)||(546043-546132)
chr5 (54-144)||(19182971-19183061)
chr5 (49-158)||(25590438-25590546)
chr5 (46-158)||(544657-544767)
chr5 (58-158)||(21069296-21069396)
chr5 (71-158)||(18400197-18400284)
chr5 (49-155)||(9537033-9537138)
chr5 (50-155)||(18004648-18004753)
chr5 (49-142)||(32640311-32640404)
chr5 (21-154)||(8075812-8075945)
chr5 (49-158)||(14891154-14891259)
chr5 (49-144)||(16611749-16611844)
chr5 (49-104)||(32641733-32641788)
chr5 (56-102)||(14881010-14881056)
chr5 (23-158)||(40612640-40612775)
chr5 (21-158)||(16978999-16979136)
chr5 (54-141)||(19186232-19186319)
chr5 (124-158)||(24900414-24900448)
chr5 (60-105)||(13483174-13483219)
chr5 (55-105)||(31947050-31947100)
chr5 (60-104)||(4594118-4594161)
[»] chr3 (31 HSPs)
chr3 (49-158)||(17701926-17702035)
chr3 (49-158)||(17700525-17700634)
chr3 (49-158)||(48572992-48573101)
chr3 (53-158)||(55389480-55389585)
chr3 (22-158)||(52318297-52318433)
chr3 (49-158)||(55388080-55388189)
chr3 (54-158)||(33428447-33428551)
chr3 (46-158)||(34263812-34263924)
chr3 (48-158)||(2592013-2592123)
chr3 (49-158)||(47118058-47118167)
chr3 (54-156)||(20464078-20464180)
chr3 (50-158)||(2591634-2591742)
chr3 (54-158)||(45600951-45601054)
chr3 (51-133)||(11773060-11773142)
chr3 (49-158)||(36278959-36279068)
chr3 (49-121)||(48574466-48574538)
chr3 (53-149)||(48808382-48808478)
chr3 (49-104)||(36280324-36280379)
chr3 (21-157)||(52316987-52317123)
chr3 (55-157)||(19114541-19114643)
chr3 (49-158)||(47075358-47075467)
chr3 (21-158)||(50753824-50753961)
chr3 (49-104)||(53959107-53959162)
chr3 (52-158)||(19115157-19115262)
chr3 (51-108)||(3671095-3671152)
chr3 (66-138)||(47427887-47427959)
chr3 (90-156)||(19331117-19331183)
chr3 (49-85)||(48809661-48809697)
chr3 (52-82)||(45598988-45599018)
chr3 (49-128)||(49261544-49261620)
chr3 (56-104)||(33427813-33427860)
[»] chr1 (24 HSPs)
chr1 (49-153)||(7945561-7945665)
chr1 (21-154)||(9339657-9339790)
chr1 (21-158)||(32665749-32665886)
chr1 (23-158)||(10332993-10333128)
chr1 (49-158)||(6612426-6612535)
chr1 (52-149)||(7944171-7944268)
chr1 (55-138)||(5783122-5783205)
chr1 (55-157)||(52440572-52440674)
chr1 (49-158)||(5782421-5782530)
chr1 (53-158)||(11060795-11060900)
chr1 (21-158)||(52439486-52439619)
chr1 (55-145)||(10333199-10333289)
chr1 (49-140)||(9341032-9341123)
chr1 (55-158)||(22856687-22856790)
chr1 (54-104)||(6613991-6614041)
chr1 (49-153)||(32664525-32664620)
chr1 (46-104)||(34088473-34088531)
chr1 (56-104)||(25037939-25037987)
chr1 (56-104)||(25043151-25043199)
chr1 (58-141)||(534574-534656)
chr1 (57-104)||(3117710-3117757)
chr1 (55-158)||(8975166-8975269)
chr1 (54-104)||(50107215-50107265)
chr1 (55-155)||(1001164-1001264)
[»] chr4 (18 HSPs)
chr4 (55-158)||(53771062-53771165)
chr4 (49-158)||(47878491-47878600)
chr4 (21-158)||(42278056-42278193)
chr4 (54-158)||(47874571-47874675)
chr4 (59-158)||(31844729-31844828)
chr4 (54-158)||(26172954-26173058)
chr4 (49-155)||(39868932-39869036)
chr4 (55-158)||(53770340-53770443)
chr4 (49-158)||(48740027-48740136)
chr4 (46-158)||(4703221-4703333)
chr4 (58-142)||(54574448-54574532)
chr4 (46-149)||(26685426-26685524)
chr4 (21-105)||(50694809-50694893)
chr4 (50-104)||(4701826-4701880)
chr4 (54-104)||(26170701-26170751)
chr4 (55-104)||(19050299-19050348)
chr4 (50-104)||(21621884-21621938)
chr4 (59-104)||(54574822-54574867)
[»] scaffold0034 (1 HSPs)
scaffold0034 (50-158)||(116062-116170)
[»] chr6 (3 HSPs)
chr6 (50-158)||(31218962-31219070)
chr6 (55-158)||(30748006-30748109)
chr6 (49-158)||(31219167-31219276)
[»] scaffold0767 (2 HSPs)
scaffold0767 (55-108)||(5656-5709)
scaffold0767 (56-149)||(6264-6357)
[»] scaffold0039 (2 HSPs)
scaffold0039 (55-146)||(79092-79183)
scaffold0039 (60-158)||(74331-74429)


Alignment Details
Target: chr7 (Bit Score: 150; Significance: 5e-79; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 235 - 447
Target Start/End: Original strand, 10899266 - 10899476
Alignment:
Q  235 aaaggagtcttatttatttgttagtcatttgtttccgtccgattaaattaattgaatgatgattcaaatgtcttgttgattgagttttgtcatattttag 334  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  10899266 aaaggagttttatttatttattagtcatttgtttccgtccgattaaatgaattgaatgatgattcaaatgtcttgttgattgagttttgtcata--ttag 10899363  T
Q  335 acttgagatattaatctttacaattgtatgcaaaagataaatcattcaattctcattnnnnnnnntggtatgcgtaggaaaacctcaaaaagtaattgtg 434  Q
    | |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||        |||||||||||||||||||||||||||||||||||    
T  10899364 atttgagagattaatctttacaattgtatacaaaagataaatcattcaattcttattaaaaaaaatggtatgcgtaggaaaacctcaaaaagtaattgtg 10899463  T
Q  435 tgtgtgactaagt 447  Q
    |||||||||||||    
T  10899464 tgtgtgactaagt 10899476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 10899052 - 10899186
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || ||| ||    
T  10899052 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgggtcaaggatct 10899151  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaagt 155  Q
    || ||||||||||||||||||||||||||||||||    
T  10899152 atgtgacagcgaggtgcagagtcagggaccaaagt 10899186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 48646159 - 48646056
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaag 154  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | || |||||||| ||||||||||||||| |||||||||||||||    
T  48646159 gactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcatagtcagggaccaaag 48646060  T
Q  155 tgac 158  Q
    ||||    
T  48646059 tgac 48646056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 7258419 - 7258282
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| |  | ||||||    
T  7258419 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacagaagtgcagagtcagagacttatttgtatttaatcctgagttagggacct 7258320  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    || ||||| ||||||| |||||||||||||||||||||    
T  7258319 atgtgacaacgaggtgtagagtcagggaccaaagtgac 7258282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 44333243 - 44333146
Alignment:
Q  61 agtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    ||||||||||||||||||||||||| ||||||||||||||||||  || | || |||||||| |||||||||||||||||||||||||||||||||||    
T  44333243 agtgataacggaagtgcagagtcagagacttatttgtatttaatcatgagtcagggacctatgtgacagcgaggtgcagagtcagggaccaaagtgac 44333146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 35727810 - 35727706
Alignment:
Q  54 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaa 153  Q
    ||||||||||||||||||| |||||||||||| ||||||||| |||||||| ||| | || |||||||| ||||||||||||||||||||||||| ||||    
T  35727810 ggactaaagtgataacggatgtgcagagtcagagacttatttatatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcagggatcaaa 35727711  T
Q  154 gtgac 158  Q
    |||||    
T  35727710 gtgac 35727706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 48788679 - 48788788
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||| || | || |||||||| ||||||||||||||| ||||| |||    
T  48788679 gtcagagactaaagtgataacggaagtgcagagtcagagacttatttatatttaattatgagtcagggacctatgtgacagcgaggtgcaaagtcaagga 48788778  T
Q  149 ccaaagtgac 158  Q
     |||||||||    
T  48788779 tcaaagtgac 48788788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 43457601 - 43457464
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || |||| | |||||||||||||||||||||||||||| |||||||||||||||||||| ||| | || ||||||    
T  43457601 acatcatcacttaacagaataacttaacgtcatgaactaaagtgataacggaagtgcagagtcggggacttatttgtatttaatcctgagtcagggacct 43457502  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    ||  ||||||||| |||||| |||||||| ||||||||    
T  43457501 atgcgacagcgagctgcagaatcagggactaaagtgac 43457464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 44334453 - 44334565
Alignment:
Q  46 aatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcag 145  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||  || | || |||||||| | |||||||| |||||| ||||    
T  44334453 aatgtcagggactaaagtgataatggaagtgcagagtcagggacttatttatatttaatcatgagtcagggacctatgtaacagcgagctgcagaatcag 44334552  T
Q  146 ggaccaaagtgac 158  Q
    | || ||||||||    
T  44334553 gaactaaagtgac 44334565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 48777372 - 48777263
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  || | || |||| ||| |||||||||| |||||| |||| ||    
T  48777372 gtcatggactaaagtgataacggaagtgcagagtcagggaattatttgtatttaatcatgagtcagggacttatgtgacagcgagctgcagaatcagaga 48777273  T
Q  149 ccaaagtgac 158  Q
    | ||||||||    
T  48777272 ctaaagtgac 48777263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 35729065 - 35729202
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| |||| ||  | || ||||||    
T  35729065 acatcatcacttaacagatttatttaatgtcagggactacagtgatagcggaagtgcagagtcagtgacttatttgtatgtaatcctaagtcaaggacct 35729164  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    || |||||||||| |||| | |||||||  ||||||||    
T  35729165 atgtgacagcgagctgcaaaatcagggaataaagtgac 35729202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 7259663 - 7259746
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||||||||       || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7259663 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgtagagtcagggacttatttgtatttaat 7259746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 8375024 - 8374930
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggac 149  Q
    |||||||||||||||||||||||| | ||||  |||| |||||||||||||||| | ||  ||||||| ||||||||||||||||||||||||||    
T  8375024 gactaaagtgataacggaagtgcaaaatcagaaacttttttgtatttaattctgagtcagagacctatgtgacagcgaggtgcagagtcagggac 8374930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 13578332 - 13578414
Alignment:
Q  54 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtg 136  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||  || || |||||||||||||||    
T  13578332 ggactaaagtgataacggaagtgcagagtcagtgacttatttgtatttaattctgagtcagtgatctttatgacagcgaggtg 13578414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 443 - 496
Target Start/End: Original strand, 10899622 - 10899675
Alignment:
Q  443 taagttgaaagtgtcccttggttaagtagttagattaagttgttttgagtgatg 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10899622 taagttgaaagtgtcccttggttaagtagttagattaagttgttttgagtgatg 10899675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 45583792 - 45583691
Alignment:
Q  57 ctaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaagtg 156  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||||||||| | || |||||||| ||| |||||  |||||| |||||||| ||||||    
T  45583792 ctaaagtgataacggaagtgcagaatcaggaacttatctgtatttaattctgagtcagggacctatgtgatagcgaactgcagaatcagggactaaagtg 45583693  T
Q  157 ac 158  Q
    ||    
T  45583692 ac 45583691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 49 - 153
Target Start/End: Complemental strand, 42477496 - 42477393
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| ||| | ||  |||||||  |||| ||||||||||||||| |||    
T  42477496 gtcagggattaaaatgataacggaagtgcagagtcagg-acttatttgtatttaatcctgagtcagagacctatgcgacaacgaggtgcagagtcaagga 42477398  T
Q  149 ccaaa 153  Q
    |||||    
T  42477397 ccaaa 42477393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 46286610 - 46286510
Alignment:
Q  58 taaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaagtga 157  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||| ||| | || |||||| | | |||||||| || |||||||||||| |||||||    
T  46286610 taaagtgataacagaagtgcagagtcagagacttatttgtatttaatcctgagtcagggacctttctaacagcgagatgaagagtcagggactaaagtga 46286511  T
Q  158 c 158  Q
    |    
T  46286510 c 46286510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 48647424 - 48647559
Alignment:
Q  23 atcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctat 122  Q
    ||||||||||||||||       || |||||||||||||||||||||  ||||||||||| || |||||||||||||||||| ||| | || ||||||||    
T  48647424 atcatcacttaacagatttttttaacgtcagggactaaagtgataacaaaagtgcagagtgagagacttatttgtatttaatcctgagtcagggacctat 48647523  T
Q  123 atgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
     ||| |||||| || ||| |||||| | ||||||||    
T  48647524 gtgatagcgagctgtagaatcagggtctaaagtgac 48647559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 30925015 - 30925124
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||| ||||||||| |||||||||||||| |||||| |||||||||||||||||| ||| | || |||||||| |||| | ||| |||||| |||||||    
T  30925015 gtcagagactaaagtaataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaaggacctatgtgactgggagctgcagaatcaggga 30925114  T
Q  149 ccaaagtgac 158  Q
      ||||||||    
T  30925115 ttaaagtgac 30925124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 12223707 - 12223815
Alignment:
Q  50 tcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggac 149  Q
    |||| ||||||||| ||||||||| ||||||||||||||||| ||| |||||||| ||| | || |||||||| |||||  || |||||| |||||||||    
T  12223707 tcagtgactaaagtaataacggaactgcagagtcagggacttctttatatttaatcctgagtcagggacctatgtgacattgatgtgcagtgtcagggac 12223806  T
Q  150 caaagtgac 158  Q
     ||||||||    
T  12223807 taaagtgac 12223815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 45584475 - 45584558
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||  | ||||||||||||||||    
T  45584475 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcattggcttatttgtatttaat 45584558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 39708214 - 39708110
Alignment:
Q  54 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaa 153  Q
    ||||||||||||||||||||||||| |||| | ||||| |||||||| |||  || | ||||||||| | |||| ||||||| ||||||||| ||| |||    
T  39708214 ggactaaagtgataacggaagtgcaaagtcggtgacttctttgtattcaatcttgagtcatggacctttgtgacggcgaggtacagagtcagagactaaa 39708115  T
Q  154 gtgac 158  Q
    |||||    
T  39708114 gtgac 39708110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 21062917 - 21062824
Alignment:
Q  65 ataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    |||||||| |||||||| |  |||||| | |||||||||| ||| | || |||||| ||||||||||||||||| |||||||||| ||||||||    
T  21062917 ataacggaggtgcagagccgaggacttctatgtatttaatcctgagtcaaggacctttatgacagcgaggtgcaaagtcagggactaaagtgac 21062824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 44530624 - 44530673
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  44530624 gactaaagtgataacggaagtgcagagtcagagacttatttatatttaat 44530673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 8375595 - 8375699
Alignment:
Q  54 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaa 153  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||||||||  || | || |||||||| |||||| | |||||  |||||||||| ||     
T  8375595 ggactaaattgataacggaagtgcagagtcagaaacttctttgtatttaatcatgagtcagggacctatgtgacagtgcggtgcgaagtcagggactaat 8375694  T
Q  154 gtgac 158  Q
    |||||    
T  8375695 gtgac 8375699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 8048800 - 8048887
Alignment:
Q  58 taaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcag 145  Q
    |||||||||||||||||||||||||| | ||||| ||||||||||||  || | ||  ||||| | || |||||||||||||||||||    
T  8048800 taaagtgataacggaagtgcagagtcggagacttctttgtatttaatcttgagtcagagacctttgtgtcagcgaggtgcagagtcag 8048887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 33607630 - 33607685
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||| ||||| |||||||||||||||||| |||| ||||| ||||||||||||    
T  33607630 gtcagggtctaaaatgataacggaagtgcagaatcagagacttctttgtatttaat 33607685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 44529144 - 44529089
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||||||||||| ||||||  ||||| | ||||||||||||||||||    
T  44529144 gtcagggactaaagtgataacagaagtgttgagtcggagacttatttgtatttaat 44529089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 5930112 - 5930174
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtc 83  Q
    ||||||||||||||||||       |||| |||||||||||||||||||||||||||| ||||    
T  5930112 acatcatcacttaacagaattatttaatggcagggactaaagtgataacggaagtgcacagtc 5930174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 24844683 - 24844588
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggacc 150  Q
    ||||||| |||||| ||||||||| | |||  ||||  |||||||||||| ||| |  ||||||||   |||||||||||||||||||||| ||||    
T  24844683 gactaaactgataatggaagtgcacattcaatgactactttgtatttaatcctgagttatggaccttggtgacagcgaggtgcagagtcagagacc 24844588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 34888930 - 34888985
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    |||| ||||||||||||||||||||||||||||| | |||| | ||| ||||||||    
T  34888930 gtcaaggactaaagtgataacggaagtgcagagttaaggacatctttatatttaat 34888985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 43461735 - 43461789
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||| |||||||||||||||||||||||| |||||   |||||||||||||||||    
T  43461735 gtcagagactaaagtgataacggaagtgcatagtca-aaacttatttgtatttaat 43461789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 12220133 - 12220084
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||| | ||||||||||||||| ||||| ||| ||||||||    
T  12220133 gactaaagtgatatcagaagtgcagagtcagagacttctttctatttaat 12220084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 32793281 - 32793232
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||||| ||| |||||| |||  ||||||||||||||||||    
T  32793281 gactaaagtgataaccgaaatgcagaatcaatgacttatttgtatttaat 32793232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 35178811 - 35178920
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | || ||||| |||||||||||| |||||||||||||||    
T  35178811 gtcagggactaaagtgataacggaagtgcagaatcagggacttatttgtatttaatcctgagtcagggaccaatatgacagcgatgtgcagagtcaggga 35178910  T
Q  149 ccaaagtgac 158  Q
    ||||||||||    
T  35178911 ccaaagtgac 35178920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 32898424 - 32898561
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  | || ||||||    
T  32898424 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctaagtcagggacct 32898523  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    || |||||| ||| ||||||||||||||| ||||||||    
T  32898524 atgtgacagtgagttgcagagtcagggactaaagtgac 32898561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 35177539 - 35177402
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | || ||||||    
T  35177539 acatcatcacttaacagattattttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatccggagtcagggacct 35177440  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    || |||||||||| |||||| | |||||| ||| ||||    
T  35177439 atgtgacagcgagctgcagaattagggactaaattgac 35177402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 45476272 - 45476181
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagg 146  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||   ||||||||| | | |||||||| || ||| |||||    
T  45476272 gactaaagtgataacagaagtgcagagtcagagacttatttgtatttaattctgaatcatggacctttctaacagcgagatgaagaatcagg 45476181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 1952949 - 1953085
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || ||||| ||||||||||||||||||||| ||||||||  ||||||||||||| |||| ||  | ||  || ||    
T  1952949 acatcatcacttaacagatttatttaacgtcagagactaaagtgataacggaagtacagagtcatagacttatttgtatgtaatcct-agtcagagatct 1953047  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    |||||||| |||| |||||| |||||||| ||||||||    
T  1953048 atatgacaacgagctgcagaatcagggactaaagtgac 1953085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 10407563 - 10407700
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || |||||| ||||||||||||||||||||||| ||| | |||||||||||| |||||| ||  | ||  |||||    
T  10407563 acatcatcacttaacagatttttttaacgtcaggaactaaagtgataacggaagtgcaaagttatggacttatttgtgtttaatcctaagtcaatgacct 10407662  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    || |||||| ||| |||||| |||| ||| ||||||||    
T  10407663 atgtgacagtgagctgcagaatcagagactaaagtgac 10407700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 41754810 - 41754899
Alignment:
Q  57 ctaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagg 146  Q
    ||||||| |||||||||||| ||||||||| |||| |||||||||||| ||| | ||  || |||| ||||||||||||||||| |||||    
T  41754810 ctaaagtaataacggaagtgtagagtcaggaacttgtttgtatttaatcctgagtcagagatctatgtgacagcgaggtgcagaatcagg 41754899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 41754097 - 41754005
Alignment:
Q  66 taacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    ||||| ||||| |||||||||||||| ||| |||||||| ||| | || |||||||| ||||||| |||||||||  ||||||| ||||||||    
T  41754097 taacgaaagtgtagagtcagggacttgtttatatttaatcctgagtcagggacctatgtgacagcaaggtgcagaaccagggactaaagtgac 41754005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 5965449 - 5965504
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||| ||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  5965449 gtcagagactaaagtgataacggaagtgcagagtcaaagacttctttgtatttaat 5965504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 31075297 - 31075405
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||| ||||||||||||||||| ||| || | ||||| |||  |||||||||||| ||| |||| | |||| | | ||| |||||||||||||||| ||    
T  31075297 gtcagtgactaaagtgataacgggagtacatattcagg-actattttgtatttaatgctgagccaagaacctttgtaacaacgaggtgcagagtcagaga 31075395  T
Q  149 ccaaagtgac 158  Q
    ||||| ||||    
T  31075396 ccaaattgac 31075405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 5736955 - 5736899
Alignment:
Q  52 agggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctg 108  Q
    ||||||||||||||||||| ||||| ||||| || || || ||||||||||||||||    
T  5736955 agggactaaagtgataacgaaagtgtagagttagagatttctttgtatttaattctg 5736899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 5738036 - 5738139
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaag 154  Q
    |||| |||||||||||||||| ||||||||   |||| ||||||||||||  || | ||||||||||| | ||| |||  |||| ||||||| || ||||    
T  5738036 gactgaagtgataacggaagtacagagtcaataacttctttgtatttaatcttgagtcatggacctatgtcacaacgatatgcaaagtcaggaactaaag 5738135  T
Q  155 tgac 158  Q
    ||||    
T  5738136 tgac 5738139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 10406320 - 10406269
Alignment:
Q  51 cagggactaaagtgataacggaagtgcagagtcagggacttatttgtattta 102  Q
    ||||||||||||||||||  ||||||||||||||| ||||| ||| ||||||    
T  10406320 cagggactaaagtgataatagaagtgcagagtcagagacttgtttttattta 10406269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 12637762 - 12637816
Alignment:
Q  46 aatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatt 100  Q
    |||||| |||||||||||||||||||||||||| | ||||| |||  ||||||||    
T  12637762 aatgtcggggactaaagtgataacggaagtgcacattcaggaactactttgtatt 12637816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 28619549 - 28619607
Alignment:
Q  46 aatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    |||||||| ||||||||||||||  ||||||||||||||  ||| | ||||||||||||    
T  28619549 aatgtcagagactaaagtgataatagaagtgcagagtcaatgacctctttgtatttaat 28619607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 28619099 - 28619050
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    |||||||||||||||| |||||||||||||  || || ||||||||||||    
T  28619099 gactaaagtgataacgaaagtgcagagtcaatgatttctttgtatttaat 28619050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 43539881 - 43539914
Alignment:
Q  123 atgacagcgaggtgcagagtcagggaccaaagtg 156  Q
    |||||||||||||||| |||||||||||||||||    
T  43539881 atgacagcgaggtgcaaagtcagggaccaaagtg 43539914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 45476576 - 45476616
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttattt 95  Q
    ||||||||||||||  ||||||||||||||| |||||||||    
T  45476576 gactaaagtgataagagaagtgcagagtcagcgacttattt 45476616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 31091534 - 31091643
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||| ||||||| |||||||||||||||||    
T  31091534 gtcagagactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtcaggga 31091633  T
Q  149 ccaaagtgac 158  Q
    ||||||||||    
T  31091634 ccaaagtgac 31091643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 32766246 - 32766355
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||| ||||| |||||||||||||||||||    
T  32766246 gtcaaggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacaacgaggtgcagagtcaggga 32766345  T
Q  149 ccaaagtgac 158  Q
    ||||||||||    
T  32766346 ccaaagtgac 32766355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 24459450 - 24459562
Alignment:
Q  46 aatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcag 145  Q
    |||||||||||||||||||||||  ||||||||| ||||| |||||||||||||||||| |||   || |||||||| |||||||||| |||||||||||    
T  24459450 aatgtcagggactaaagtgataatagaagtgcagggtcagagacttatttgtatttaatcctgattcagggacctatgtgacagcgagatgcagagtcag 24459549  T
Q  146 ggaccaaagtgac 158  Q
    |||||||||||||    
T  24459550 ggaccaaagtgac 24459562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 32765054 - 32764945
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||  ||||||||||||| | || |||||| |||||||    
T  32765054 gtcagggattaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagagacctatatgacaactagctgcagaatcaggga 32764955  T
Q  149 ccaaagtgac 158  Q
    | ||||||||    
T  32764954 ctaaagtgac 32764945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 34037687 - 34037789
Alignment:
Q  56 actaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaagt 155  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||| ||| |  |||||||| ||||||||| ||||||||||||| |||| |||||    
T  34037687 actaaagtgataacagaagtgcagagtcatagacttatttgtatttaatcctgagttatggacctttatgacagcaaggtgcagagtcaaggactaaagt 34037786  T
Q  156 gac 158  Q
    |||    
T  34037787 gac 34037789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 40000315 - 40000450
Alignment:
Q  23 atcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctat 122  Q
    ||||||||||||||||       || |||||||| |||||||||||||||||||||| || || |||||||||||||||||| ||    || ||| ||||    
T  40000315 atcatcacttaacagattttcttaacgtcagggaataaagtgataacggaagtgcagggttagagacttatttgtatttaatcctcaatcagggatctat 40000414  T
Q  123 atgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
     | |||||||||||||||||||||||||||||||||    
T  40000415 gtaacagcgaggtgcagagtcagggaccaaagtgac 40000450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 31090280 - 31090171
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||||||||||| | ||||||||||||||||||||| ||||||||| |||||||| ||| | || |||||||| |||||||||| |||||| |||||||    
T  31090280 gtcagggactaaaatcataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaaggacctatgtgacagcgagctgcagaatcaggga 31090181  T
Q  149 ccaaagtgac 158  Q
    | ||| ||||    
T  31090180 ctaaattgac 31090171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 17330209 - 17330342
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| | || ||||||    
T  17330209 acatcatcacttaacagaataacttaacgtcatggactaaagtgataacggaaatgcagagtcagagacttatttgtatttaatcctgagtcagggacct 17330308  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaag 154  Q
    || |||||| ||| |||||| ||| |||| ||||    
T  17330309 atgtgacagtgagctgcagaatcaaggactaaag 17330342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 5915003 - 5915108
Alignment:
Q  53 gggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaa 152  Q
    |||| ||| ||||||||||||||||||||| || ||||| |||||||||||||||| | ||  ||||||| ||| ||||||||||||||||| |||| ||    
T  5915003 gggattaaggtgataacggaagtgcagagttagtgacttctttgtatttaattctgagtcaaagacctatttgaaagcgaggtgcagagtcatggactaa 5915102  T
Q  153 agtgac 158  Q
    ||||||    
T  5915103 agtgac 5915108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 14704122 - 14704049
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctat 122  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | || ||||||||    
T  14704122 gtcagggactaaagtgataacggaagtgcagagtgagggacttatttgtatttaatcctgagtcagggacctat 14704049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 7073783 - 7073700
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||||||||       || |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  7073783 acatcatcacttaacagaataacttaacgtcagggactaaagtgataacggaagtgcagaatcagagacttatttgtatttaat 7073700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 17466841 - 17466930
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtca 144  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| | ||  | | ||| |||||||||||||||||||||    
T  17466841 gactaaagtgataacggaagtgcagagtcagagacttctttgtatttaatcctgagtcagcggcttatgtgacagcgaggtgcagagtca 17466930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 2910244 - 2910127
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || ||||||||||||||||| || |||||||||||||||| |||||||||||||||||| | | | || ||| ||    
T  2910244 acatcatcacttaacagatttttttaacgtcagggactaaagtgacaaaggaagtgcagagtcagagacttatttgtatttaatcccgagtcagggatct 2910145  T
Q  121 atatgacagcgaggtgca 138  Q
    || |||||||||| ||||    
T  2910144 atgtgacagcgagctgca 2910127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 24458170 - 24458067
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaag 154  Q
    |||||||||||||||| ||||| ||||||||  |||||||||||||||||| || | || |||||||| ||| |||||| |||| | |||||||| ||||    
T  24458170 gactaaagtgataacgaaagtgtagagtcagaaacttatttgtatttaattttgagtcagggacctatgtgatagcgagctgcataatcagggactaaag 24458071  T
Q  155 tgac 158  Q
    ||||    
T  24458070 tgac 24458067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 2911505 - 2911607
Alignment:
Q  56 actaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaagt 155  Q
    ||||||||||||||||||||||| |||||| ||||||||| ||||||| | || | ||||| | ||| |||||||||| ||||||  ||| |||||||||    
T  2911505 actaaagtgataacggaagtgcaaagtcagagacttatttatatttaactttgagtcatggccttatgtgacagcgagctgcagaaccagagaccaaagt 2911604  T
Q  156 gac 158  Q
    |||    
T  2911605 gac 2911607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 34582677 - 34582786
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    |||||||||||||||||||||||||||||| | |||||||||  |||||||||||| | | | ||  ||||| | | ||||| |||||||||||||||||    
T  34582677 gtcagggactaaagtgataacggaagtgcacattcagggactactttgtatttaatcccgagtcaatgacctttgtaacagcaaggtgcagagtcaggga 34582776  T
Q  149 ccaaagtgac 158  Q
    | || |||||    
T  34582777 ctaacgtgac 34582786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 39015114 - 39015013
Alignment:
Q  56 actaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaagt 155  Q
    |||||| |||||| | |||||||||||||  ||| |||||||||||||| ||| | || ||| |||| || ||||||||||||||||||||||| |||||    
T  39015114 actaaaatgataatgaaagtgcagagtcaaagacgtatttgtatttaatcctgagtcaaggatctatgtggcagcgaggtgcagagtcagggacaaaagt 39015015  T
Q  156 ga 157  Q
    ||    
T  39015014 ga 39015013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 38985002 - 38985053
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattc 106  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  38985002 gactaaagtgataacggaagtgcagagtcaaggacttctttgtatttaattc 38985053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 31814323 - 31814442
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       ||||  |||||||||||||||||||||||||||||||||   |||| ||| |||||||||||| | ||  |||||    
T  31814323 acatcatcacttaacagaattatttaatgctagggactaaagtgataacggaagtgcagagtcaaaaacttctttatatttaattctgagtcagagacct 31814422  T
Q  121 atatgacagcgaggtgcagagt 142  Q
     ||  |||||||||||||||||    
T  31814423 tta--acagcgaggtgcagagt 31814442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 38853871 - 38853762
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||| ||||||| |||||||||||||||| | | |||||||  |||||||||||| ||| | ||  ||||| |||||||  || ||| |||||||||||    
T  38853871 gtcagtgactaaattgataacggaagtgcacatttagggactactttgtatttaatcctgagtcagagacctttatgacaatgaagtgtagagtcaggga 38853772  T
Q  149 ccaaagtgac 158  Q
    ||||||||||    
T  38853771 ccaaagtgac 38853762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 12746213 - 12746317
Alignment:
Q  54 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaa 153  Q
    ||||||||||||||||||||| ||| | ||||| |||  |||||||||||| ||| | || | |||| || ||| |||||||||||||||| | ||||||    
T  12746213 ggactaaagtgataacggaagggcacattcaggaactactttgtatttaatcctgagtcaggaacctttaagactgcgaggtgcagagtcaagaaccaaa 12746312  T
Q  154 gtgac 158  Q
    |||||    
T  12746313 gtgac 12746317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 21733785 - 21733833
Alignment:
Q  56 actaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  21733785 actaaagtgatgacggaagtgcagagtcagagacttatttgtatttaat 21733833  T

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Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 5914412 - 5914324
Alignment:
Q  57 ctaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcag 145  Q
    ||||||||||||||| |||||| |||||  ||||| ||||||||||||| || | ||  ||||||||| ||| ||||||||| ||||||    
T  5914412 ctaaagtgataacgggagtgcaaagtcactgacttctttgtatttaattgtgagtcagagacctatatcacaacgaggtgcaaagtcag 5914324  T

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Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 17466157 - 17466102
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||||||| ||||||||||||||||||| ||  | ||||||||||||    
T  17466157 gtcagggactaaagtgaaaacggaagtgcagagtcagagatatctttgtatttaat 17466102  T

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Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 39016390 - 39016441
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||| ||||||||||||||||||||||||||||    ||||||||||||||||||    
T  39016390 gtcagagactaaagtgataacggaagtgcagagt----gacttatttgtatttaat 39016441  T

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Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 14705122 - 14705163
Alignment:
Q  117 acctatatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    |||||| |||||||||||||||||||| ||||||||||||||    
T  14705122 acctatgtgacagcgaggtgcagagtccgggaccaaagtgac 14705163  T

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Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 38854904 - 38854796
Alignment:
Q  50 tcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggac 149  Q
    |||| ||||||| |||||||  ||||||| | | ||| |||  |||||||||||| ||| | ||  ||||| ||||||| ||| ||| ||||||||||||    
T  38854904 tcagtgactaaattgataacataagtgcacatttaggaactactttgtatttaatcctgagtcaaagacctttatgacaacgaagtgtagagtcagggac 38854805  T
Q  150 caaagtgac 158  Q
    |||||||||    
T  38854804 caaagtgac 38854796  T

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Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 7412211 - 7412153
Alignment:
Q  46 aatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||| |||||||||||||||||||||||||||   |||| ||||| ||| ||||||||    
T  7412211 aatgttagggactaaagtgataacggaagtgcactatcagtgacttctttatatttaat 7412153  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 37607218 - 37607189
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgca 78  Q
    ||||||||||||||||||||||||||||||    
T  37607218 gtcagggactaaagtgataacggaagtgca 37607189  T

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Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 28591125 - 28591230
Alignment:
Q  53 gggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaa 152  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| | || |||||||| ||||||||||||||||||||||||| |||    
T  28591125 gggactaaagtgataaaggaagtgcagagtcagggatttatttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcagggatcaa 28591224  T
Q  153 agtgac 158  Q
    ||||||    
T  28591225 agtgac 28591230  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 2464785 - 2464676
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||  || | |||||||||||||||||||||| |||||| |||| ||    
T  2464785 gtcagagactaaagtgataacgtaagtgcagagttagggacttatttgtatttaatcatgagtcatggacctatatgacagcgagctgcagaatcagtga 2464686  T
Q  149 ccaaagtgac 158  Q
    | ||||||||    
T  2464685 ctaaagtgac 2464676  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 2466781 - 2466890
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||   ||  ||||||| ||| |||||||||||||||||| ||    
T  2466781 gtcagggactaaagtgataacggaagtgcagagttagggacttatttttatttaatcctgaatcaatgacctatgtgatagcgaggtgcagagtcagaga 2466880  T
Q  149 ccaaagtgac 158  Q
    ||||||||||    
T  2466881 ccaaagtgac 2466890  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 8074567 - 8074458
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||| ||| |||||||||| |||| | |||||||    
T  8074567 gtcaggaactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacttatgtgacagcgagctgcataatcaggga 8074468  T
Q  149 ccaaagtgac 158  Q
    | ||||||||    
T  8074467 ctaaagtgac 8074458  T

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Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 4593005 - 4592868
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | || |||| |    
T  4593005 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggactt 4592906  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    || |||||||||| | || | |||||||| ||||||||    
T  4592905 atgtgacagcgagctacataatcagggactaaagtgac 4592868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 9538057 - 9538165
Alignment:
Q  50 tcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggac 149  Q
    |||| ||||||| |||||||||||||||| | |||| ||||| |||||||||||| ||| | || |||||||||||||| |||| |||||||||||||||    
T  9538057 tcagagactaaaatgataacggaagtgcacaatcagagacttctttgtatttaatcctgagtcagggacctatatgacaacgagatgcagagtcagggac 9538156  T
Q  150 caaagtgac 158  Q
    |||||||||    
T  9538157 caaagtgac 9538165  T

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Target: chr5; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 546043 - 546132
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgca 138  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||| | || |||||||| |||||||||| ||||    
T  546043 gtcagggactaaagtgataacggaagtgcagagtcaaggacttatctgtatttaatcctgagtcagggacctatgtgacagcgagctgca 546132  T

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Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 19183061 - 19182971
Alignment:
Q  54 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtca 144  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| | ||  ||||||| ||||||||||||||| |||||    
T  19183061 ggactaaagtgataacggaagtgtagagtcaggaacttatttgtatttaatcctgagtcagagacctatgtgacagcgaggtgcaaagtca 19182971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 25590546 - 25590438
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||| || |||||||||||| |||||||||| |||| ||||||||||||||||| || | | || |||||||| ||||||||||||||||||||||  |    
T  25590546 gtcagagattaaagtgataacagaagtgcagaatcagagacttatttgtatttaa-tccgagtcagggacctatgtgacagcgaggtgcagagtcagaaa 25590448  T
Q  149 ccaaagtgac 158  Q
     |||||||||    
T  25590447 acaaagtgac 25590438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 544767 - 544657
Alignment:
Q  46 aatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcag 145  Q
    ||||||||  |||||| | ||||||||||||||||||||| |||||||||||||||||| ||| | ||  ||||||| ||||| ||| |||||||||||     
T  544767 aatgtcagaaactaaatttataacggaagtgcagagtcagtgacttatttgtatttaatcctgagtcagagacctatctgaca-cgaagtgcagagtca- 544670  T
Q  146 ggaccaaagtgac 158  Q
    |||||||||||||    
T  544669 ggaccaaagtgac 544657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 21069396 - 21069296
Alignment:
Q  58 taaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaagtga 157  Q
    |||||||| ||| |||||||||||||| ||||||||||||||||||| ||| | ||  ||||| | ||||| |||||||||||||||| ||| |||||||    
T  21069396 taaagtgaaaacagaagtgcagagtcaaggacttatttgtatttaatcctgagtcagagacctctgtgacaacgaggtgcagagtcagagactaaagtga 21069297  T
Q  158 c 158  Q
    |    
T  21069296 c 21069296  T

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Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 18400284 - 18400197
Alignment:
Q  71 gaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    ||||||||||||||| ||||| ||| |||||||| ||| | || |||||||| |||||| ||||||||||||||||||| ||||||||    
T  18400284 gaagtgcagagtcagtgacttctttttatttaatcctgagtcaaggacctatgtgacagtgaggtgcagagtcagggactaaagtgac 18400197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 9537138 - 9537033
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||| |||||||||||||| ||||||||| ||||| | |||| |||||||||||||||  | ||  ||||||| ||||||||||||||||||| |||||    
T  9537138 gtcagtgactaaagtgataatggaagtgcacagtcatg-acttctttgtatttaattctaagtcagagacctatgtgacagcgaggtgcagagtgaggga 9537040  T
Q  149 ccaaagt 155  Q
    | |||||    
T  9537039 ctaaagt 9537033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 155
Target Start/End: Complemental strand, 18004753 - 18004648
Alignment:
Q  50 tcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggac 149  Q
    |||| ||||||||||||||||||||||||||||||  ||| | |||||||||||| ||  || || ||| | | |||||| |||||||||||||||||||    
T  18004753 tcagagactaaagtgataacggaagtgcagagtcatagacctctttgtatttaatcctaagctatagacttttgtgacagtgaggtgcagagtcagggac 18004654  T
Q  150 caaagt 155  Q
     |||||    
T  18004653 taaagt 18004648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 32640404 - 32640311
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagt 142  Q
    ||||| ||||||||||||||| |||||  ||||| ||||||||||||||||||||| ||| |  |||| ||||| |||||| ||||||||||||    
T  32640404 gtcagagactaaagtgataacagaagtttagagttagggacttatttgtatttaatcctgagttatggtcctatgtgacagtgaggtgcagagt 32640311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 8075812 - 8075945
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || |||||||||||||||||||||| ||||||||| ||||  |||| ||||||||||||  ||   || ||| ||    
T  8075812 acatcatcacttaacagattttttaaacgtcagggactaaagtgataacgaaagtgcagaatcagatacttttttgtatttaatcttgaatcagggatct 8075911  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaag 154  Q
    || | |||||||||||||||||||  ||||||||    
T  8075912 atctaacagcgaggtgcagagtcaatgaccaaag 8075945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 14891154 - 14891259
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||| |||||||||||||||||||||| |||||||| |||||    | |||||||  || | ||  ||||||| ||||||||||||||||||| |||||    
T  14891154 gtcagagactaaagtgataacggaagtgtagagtcagagactt----gcatttaatcatgagtcagagacctatgtgacagcgaggtgcagagtgaggga 14891249  T
Q  149 ccaaagtgac 158  Q
    ||||||||||    
T  14891250 ccaaagtgac 14891259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 16611844 - 16611749
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtca 144  Q
    ||||| |||||||||||||||||||||||| | |||| | ||| |||||||||||| ||| | ||  ||||||| ||||||||||||| |||||||    
T  16611844 gtcagagactaaagtgataacggaagtgcataatcagaggcttctttgtatttaatcctgagtcagagacctatgtgacagcgaggtgtagagtca 16611749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 32641733 - 32641788
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    |||||||| ||||||||||||||||||||||||||||  |||||||||||||||||    
T  32641733 gtcagggattaaagtgataacggaagtgcagagtcagcaacttatttgtatttaat 32641788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 14881056 - 14881010
Alignment:
Q  56 actaaagtgataacggaagtgcagagtcagggacttatttgtattta 102  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  14881056 actaaagtgataacggaagtgcagagtcagggacttatttgtgttta 14881010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 40612640 - 40612775
Alignment:
Q  23 atcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctat 122  Q
    ||||||||||||||||       || |||||| | ||||||||||||||||||||||||||||| |  ||| |||||||||| ||| | || |||||||     
T  40612640 atcatcacttaacagatttttttaacgtcaggaattaaagtgataacggaagtgcagagtcaggaaaatatctgtatttaatcctgagtcagggacctac 40612739  T
Q  123 atgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
     |||||| ||| |||| | |||||||| ||||||||    
T  40612740 gtgacagtgagctgcaaaatcagggactaaagtgac 40612775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 16979136 - 16978999
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || || || ||||||| |||||||| |||| |||||| ||||||||||||| ||||||||||| | ||  |||||    
T  16979136 acatcatcacttaacagaataacttaacgttagagactaaaatgataacgtaagtacagagttagggacttatttgcatttaattctgagtcaatgacct 16979037  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
     | || |||| ||||||| ||||| |||| ||||||||    
T  16979036 ttgtggcagcaaggtgcaaagtcaaggactaaagtgac 16978999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 19186232 - 19186319
Alignment:
Q  54 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagag 141  Q
    |||||||||||||||||||| || |||||||| ||||| |||||||||||| ||  | || |||||||| |||| | ||| |||||||    
T  19186232 ggactaaagtgataacggaaatgtagagtcagagacttgtttgtatttaatcctaagtcagggacctatgtgactgggagatgcagag 19186319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 24900414 - 24900448
Alignment:
Q  124 tgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    |||||||||||||||||||||||||||||||||||    
T  24900414 tgacagcgaggtgcagagtcagggaccaaagtgac 24900448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 13483174 - 13483219
Alignment:
Q  60 aagtgataacggaagtgcagagtcagggacttatttgtatttaatt 105  Q
    ||||||||||||||||||| |||||| ||||| |||||||||||||    
T  13483174 aagtgataacggaagtgcaaagtcagagacttgtttgtatttaatt 13483219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 31947050 - 31947100
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatt 105  Q
    |||||||||||||||||||||  |||||||  ||||| |||||||||||||    
T  31947050 gactaaagtgataacggaagtctagagtcatagacttgtttgtatttaatt 31947100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 4594118 - 4594161
Alignment:
Q  60 aagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||    
T  4594118 aagtgataatggaagtgcagagtca-tgacttatttgtatttaat 4594161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 17701926 - 17702035
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | || ||||||||||||||||||| |||||| |||| ||    
T  17701926 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggacctatatgacagcgagctgcagaatcagaga 17702025  T
Q  149 ccaaagtgac 158  Q
    | ||||||||    
T  17702026 ctaaagtgac 17702035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 17700634 - 17700525
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || | |||||| ||||| |||||||||||||||  ||    
T  17700634 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcaggaacctatgtgacaacgaggtgcagagtcaaaga 17700535  T
Q  149 ccaaagtgac 158  Q
    | ||||||||    
T  17700534 ctaaagtgac 17700525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 48573101 - 48572992
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    |||| |||||||||||||||||||||||||||||||| | |||||||||||||||| ||| | || |||||||| ||| | |||||||||||||||||||    
T  48573101 gtcaaggactaaagtgataacggaagtgcagagtcagaggcttatttgtatttaatcctgagtcagggacctatgtgataacgaggtgcagagtcaggga 48573002  T
Q  149 ccaaagtgac 158  Q
    ||||||||||    
T  48573001 ccaaagtgac 48572992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 55389480 - 55389585
Alignment:
Q  53 gggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaa 152  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||| || | ||  ||||||| ||||||||||||||||||| |||||||||    
T  55389480 gggactaaagtgataacggaagtgtagagtcagggacttaattgtatttaattttgagtcaatgacctatgtgacagcgaggtgcagagttagggaccaa 55389579  T
Q  153 agtgac 158  Q
    ||||||    
T  55389580 agtgac 55389585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 52318297 - 52318433
Alignment:
Q  22 catcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggaccta 121  Q
    |||||||||||||||||       || ||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| ||| | || ||| |||    
T  52318297 catcatcacttaacagatttttttaacgtcagggactaaagtaatatcagaagtgcagagtcagggacttatttgtatttaatcctgagtcagggatcta 52318396  T
Q  122 tatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    | ||||||||| |||||||||||| ||||||||||||    
T  52318397 tgtgacagcgaagtgcagagtcagagaccaaagtgac 52318433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 55388189 - 55388080
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||| ||| | ||  |||||||||||||||||| |||||| |||||||    
T  55388189 gtcagggactaaagtgataacgggagtgcagagtcagtaacttatttgtatttaatcctgagtcagagacctatatgacagcgagctgcagaatcaggga 55388090  T
Q  149 ccaaagtgac 158  Q
    | ||||||||    
T  55388089 ctaaagtgac 55388080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 33428447 - 33428551
Alignment:
Q  54 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaa 153  Q
    |||||||||||| ||||||| |||||||||| |||||| |||||||||||||||| | || |||||||| ||||| |||||||||||||||||||| |||    
T  33428447 ggactaaagtgacaacggaaatgcagagtcaaggacttctttgtatttaattctgagtcagggacctatgtgacaacgaggtgcagagtcagggacgaaa 33428546  T
Q  154 gtgac 158  Q
    |||||    
T  33428547 gtgac 33428551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 34263924 - 34263812
Alignment:
Q  46 aatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcag 145  Q
    ||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||||||| |||   || |||||| | ||||||||||||||||||||||    
T  34263924 aatgtcagggattaaagtgataatggaagtgtagagtcagagacttatttgtatttaatcctgaatcaaggacctctgtgacagcgaggtgcagagtcag 34263825  T
Q  146 ggaccaaagtgac 158  Q
    || ||||||||||    
T  34263824 gggccaaagtgac 34263812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 2592013 - 2592123
Alignment:
Q  48 tgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggg 147  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||| ||| | || |||||||| |||||||||| |||||| | ||||    
T  2592013 tgtcagggactaaagtgataacggaagtattgagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgagctgcagaattaggg 2592112  T
Q  148 accaaagtgac 158  Q
    || ||||||||    
T  2592113 actaaagtgac 2592123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 47118058 - 47118167
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    |||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||| ||| | |  |||| ||||||||| |||||||||||||||||||    
T  47118058 gtcagggactaaagtgataacgaaagtgcagagtcagagacttctttgcatttaatcctgagtcggggacttatatgacaacgaggtgcagagtcaggga 47118157  T
Q  149 ccaaagtgac 158  Q
    | ||||||||    
T  47118158 ctaaagtgac 47118167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 20464180 - 20464078
Alignment:
Q  54 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaa 153  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||  || |||| |||||| | ||||| |||||||||||||| ||||| |||    
T  20464180 ggactaaagtgataacagaagtgcagagtcagggacttctttgtatttaatcatgagccagggacctttgtgacaacgaggtgcagagtcggggactaaa 20464081  T
Q  154 gtg 156  Q
    |||    
T  20464080 gtg 20464078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 2591742 - 2591634
Alignment:
Q  50 tcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggac 149  Q
    ||||||||||||||||| | |||||||||||||||| ||||| |||||||||||| ||| | || |||||||| ||||||| || |||||| ||||||||    
T  2591742 tcagggactaaagtgatcatggaagtgcagagtcagagacttgtttgtatttaatcctgagtcagggacctatgtgacagcaagctgcagaatcagggac 2591643  T
Q  150 caaagtgac 158  Q
     ||||||||    
T  2591642 taaagtgac 2591634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 45600951 - 45601054
Alignment:
Q  54 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaa 153  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||| |||   || |||||||| |||||||||||  ||||||||||||| |||    
T  45600951 ggactaaagtgataacggaagtgcagagtca-ggacttctttgtatttaatcctgaatcagggacctatgtgacagcgagggacagagtcagggactaaa 45601049  T
Q  154 gtgac 158  Q
    |||||    
T  45601050 gtgac 45601054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 11773060 - 11773142
Alignment:
Q  51 cagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgag 133  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| | || |||||||| ||||||||||    
T  11773060 cagggactaaagtgataacggaagtgtagagtcagagacttatttgtatttaatcctgagtcagggacctatgtgacagcgag 11773142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 36279068 - 36278959
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||   || |||||||| ||||| |||| || | | |||||||    
T  36279068 gtcagggactaaaatgataacggaagtgcagagtcagagacttatttgtatttaatcctgaatcagggacctatgtgacaacgagctgtataatcaggga 36278969  T
Q  149 ccaaagtgac 158  Q
    | ||||||||    
T  36278968 ctaaagtgac 36278959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 48574466 - 48574538
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggaccta 121  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | || |||||||    
T  48574466 gtcaaggactaaagtgataacgaaagtgcagagtcagggacttatttgtatttaatcctgagtcagggaccta 48574538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 48808478 - 48808382
Alignment:
Q  53 gggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggac 149  Q
    ||||||||||||| |||||||||||||||| ||| ||||||||||||||||| ||| | ||  ||||||| | |||||||| |||||| ||||||||    
T  48808478 gggactaaagtgacaacggaagtgcagagttaggaacttatttgtatttaatcctgagtcagagacctatctaacagcgagctgcagaatcagggac 48808382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 36280324 - 36280379
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  36280324 gtcagggactaaagtgataacggaagtgcagagtcagagacttatttatatttaat 36280379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 52317123 - 52316987
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || |||| |||||||| |||||||||| ||||||||| |  ||||||||||||||||||  || | ||  |||||    
T  52317123 acatcatcacttaacagatttttttaacgtcatggactaaaatgataacggaggtgcagagttaaagacttatttgtatttaatcatgagtcagagacct 52317024  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaagtga 157  Q
    ||||||||||||| |||||| |||| ||| |||||||    
T  52317023 atatgacagcgagctgcagaatcagagactaaagtga 52316987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 19114643 - 19114541
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaag 154  Q
    |||||||||||||||||||||||| ||| || ||||| ||||||||||||  || | || |||||| | ||||| ||| |||||||||||||||| ||||    
T  19114643 gactaaagtgataacggaagtgcaaagttagtgacttctttgtatttaatcttgagtcagggacctctgtgacaacgaagtgcagagtcagggactaaag 19114544  T
Q  155 tga 157  Q
    |||    
T  19114543 tga 19114541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 47075358 - 47075467
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||| |||||||||||||||||||||| ||||||||||  || ||||||||||||  || |  | |||||||| ||||| ||||||||||||||| |||    
T  47075358 gtcagagactaaagtgataacggaagtgtagagtcaggggtttctttgtatttaatcttgagtgacggacctatgtgacaacgaggtgcagagtcaagga 47075457  T
Q  149 ccaaagtgac 158  Q
      ||||||||    
T  47075458 ttaaagtgac 47075467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 50753961 - 50753824
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || | ||||||||||||||||||| |||||| ||||||||  |||| ||| |||||||| |||    | ||||||    
T  50753961 acatcatcacttaacagatttttttaacggcagggactaaagtgataacagaagtgtagagtcagaaacttgtttatatttaatcctgaattagggacct 50753862  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    || ||||||||||||||||||  |||||| ||||||||    
T  50753861 atgtgacagcgaggtgcagagctagggactaaagtgac 50753824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 53959107 - 53959162
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||| |||||||||||||||||||||||||||||| | |||||||||||||||||    
T  53959107 gtcagagactaaagtgataacggaagtgcagagtcatgaacttatttgtatttaat 53959162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 19115157 - 19115262
Alignment:
Q  52 agggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggacca 151  Q
    |||||||||||| | |||||||||||||||||| | |||| |||||||||||| ||| |  | |||||||| ||||| ||||||||||||||| | || |    
T  19115157 agggactaaagtaaaaacggaagtgcagagtcatg-acttctttgtatttaatcctgagtgaaggacctatgtgacatcgaggtgcagagtcacgaacta 19115255  T
Q  152 aagtgac 158  Q
    |||||||    
T  19115256 aagtgac 19115262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 3671152 - 3671095
Alignment:
Q  51 cagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctg 108  Q
    |||||| ||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  3671152 cagggattaaagtgataacggaagtggagagtcatagacttatttgtatttaattctg 3671095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 47427959 - 47427887
Alignment:
Q  66 taacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgca 138  Q
    ||||| ||||||| |||||||||||| ||||||||||||| || | || |||||||| |||||||||||||||    
T  47427959 taacgtaagtgcacagtcagggacttctttgtatttaattttgagtcaaggacctatgtgacagcgaggtgca 47427887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 19331183 - 19331117
Alignment:
Q  90 ttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaagtg 156  Q
    ||||||||||||||| ||| | || |||||||| ||||||| ||||||||||||||| || ||||||    
T  19331183 ttatttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtcaggaacgaaagtg 19331117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 48809661 - 48809697
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcag 85  Q
    |||| ||||||||||||||||||||||||||||||||    
T  48809661 gtcatggactaaagtgataacggaagtgcagagtcag 48809697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 82
Target Start/End: Complemental strand, 45599018 - 45598988
Alignment:
Q  52 agggactaaagtgataacggaagtgcagagt 82  Q
    |||||||||||||||||||||||||||||||    
T  45599018 agggactaaagtgataacggaagtgcagagt 45598988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 49261544 - 49261620
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgaca 128  Q
    ||||| ||||||||||||||||||| |||||||| || |||   |||||||||||| ||| | || |||||||| |||||    
T  49261544 gtcagagactaaagtgataacggaaatgcagagttagagac---tttgtatttaatcctgagtcagggacctatgtgaca 49261620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 33427860 - 33427813
Alignment:
Q  56 actaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||||| ||||||||||||||||  | |||||||||||||    
T  33427860 actaaagtgataacgaaagtgcagagtcaggg-ttaatttgtatttaat 33427813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 7945561 - 7945665
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||| | || | |||||| |||||||||||||||||||||||||    
T  7945561 gtcagggactaaagtgataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaggaacctatgtgacagcgaggtgcagagtcaggga 7945660  T
Q  149 ccaaa 153  Q
    |||||    
T  7945661 ccaaa 7945665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 9339790 - 9339657
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| | || ||||||    
T  9339790 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcggggatttatttgtatttaatcctgagtcagggacct 9339691  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaag 154  Q
    || | ||| |||| |||||| |||||||| ||||    
T  9339690 atgtaacaacgagctgcagaatcagggactaaag 9339657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 32665749 - 32665886
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || | ||||||||||||||||||||||||||||||||||  ||||||||||||||||||  || | ||  |||||    
T  32665749 acatcatcacttaacagatttttgtaacgccagggactaaagtgataacggaagtgcagagtcaaagacttatttgtatttaatcatgagtcagagacct 32665848  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    || |||||||||| |||||| |||||||| ||||||||    
T  32665849 atgtgacagcgagctgcagaatcagggactaaagtgac 32665886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 10333128 - 10332993
Alignment:
Q  23 atcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctat 122  Q
    ||||||||||||||||       || |||| |||||||| |||||||||||||||||||| |||||||||||| |||||||| |||   || ||||||||    
T  10333128 atcatcacttaacagatttttttaacgtcaaggactaaaatgataacggaagtgcagagtaagggacttatttatatttaatcctgaatcaaggacctat 10333029  T
Q  123 atgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
     ||||| ||||||||| |||||||||| ||||||||    
T  10333028 gtgacaacgaggtgcaaagtcagggactaaagtgac 10332993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 6612535 - 6612426
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    |||||||| ||||||||||| |||||||||||||||| ||||| ||||||||||||  || | ||  ||| | ||| |||||||||||||||||||||||    
T  6612535 gtcagggattaaagtgataatggaagtgcagagtcagagacttgtttgtatttaatcatgagtcagagacatttataacagcgaggtgcagagtcaggga 6612436  T
Q  149 ccaaagtgac 158  Q
    | ||||||||    
T  6612435 ctaaagtgac 6612426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 7944268 - 7944171
Alignment:
Q  52 agggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggac 149  Q
    |||||||||| |||||||| ||||||||||||| |||||||||||||||||||| || | || |||||||| |||||||||| |||| | ||||||||    
T  7944268 agggactaaattgataacgaaagtgcagagtcaaggacttatttgtatttaattttgagtcagggacctatgtgacagcgagttgcaaaatcagggac 7944171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 5783122 - 5783205
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgca 138  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||| | |  ||| |||| |||||||||||||||    
T  5783122 gactaaagtgataacggaagtgcagagtcatggacttctttgtatttaattctgagtcgaggatctatgtgacagcgaggtgca 5783205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 55 - 157
Target Start/End: Original strand, 52440572 - 52440674
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaag 154  Q
    |||||||||||||| |||||||||||||||| ||||||||| |||||||| |||   || |||||||| ||||||||| ||||| |||||| |||||| |    
T  52440572 gactaaagtgataatggaagtgcagagtcagagacttatttatatttaatcctgactcagggacctatgtgacagcgatgtgcaaagtcagagaccaatg 52440671  T
Q  155 tga 157  Q
    |||    
T  52440672 tga 52440674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 5782530 - 5782421
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||| |||||||||||||| ||||||||| | |||| ||||| ||||||||||||  || | ||  ||||||| |||||||||||||||||||||||||    
T  5782530 gtcagagactaaagtgataagggaagtgcataatcagagacttctttgtatttaatcatgagtcagagacctatgtgacagcgaggtgcagagtcaggga 5782431  T
Q  149 ccaaagtgac 158  Q
    | ||| ||||    
T  5782430 ctaaaatgac 5782421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 11060795 - 11060900
Alignment:
Q  53 gggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaa 152  Q
    |||||||||||||||||| ||||||  | |||||||||  ||||||||||||| || | ||||||||| | ||||||||||||||| ||||| ||| |||    
T  11060795 gggactaaagtgataacgaaagtgcccattcagggactattttgtatttaattttgagtcatggacctttgtgacagcgaggtgcatagtcaaggatcaa 11060894  T
Q  153 agtgac 158  Q
    ||||||    
T  11060895 agtgac 11060900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 52439619 - 52439486
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || ||||||||||||||||||||||||| |||||    || ||||||| |||||||||| ||| ||||  |||||    
T  52439619 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaaatgcag----agagacttatctgtatttaatcctgagccagagacct 52439524  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    || |||||||||| |||||| |||||| | ||||||||    
T  52439523 atgtgacagcgagctgcagaatcaggggctaaagtgac 52439486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 10333199 - 10333289
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcag 145  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||  || | ||  ||||||| | |||||||| |||||| ||||    
T  10333199 gactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcttgagtcagagacctatgtaacagcgagctgcagaatcag 10333289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 9341032 - 9341123
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcaga 140  Q
    ||||| ||||||||||||||| |||||||| |||||| |||||||||||||||||| ||| | || |||||||| ||| || ||| ||||||    
T  9341032 gtcagagactaaagtgataacagaagtgcaaagtcagagacttatttgtatttaatcctgagtcagggacctatgtgatagtgagatgcaga 9341123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 22856790 - 22856687
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaag 154  Q
    |||||||||||||||||||||||||||| || ||||| |||||||||||| ||| | || | | || | | ||| || ||||||||||||| ||| ||||    
T  22856790 gactaaagtgataacggaagtgcagagttagagacttctttgtatttaatcctgagtcaagaatctttgtaacaacgtggtgcagagtcagtgactaaag 22856691  T
Q  155 tgac 158  Q
    ||||    
T  22856690 tgac 22856687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 6613991 - 6614041
Alignment:
Q  54 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  6613991 ggactaaaatgataactgaagtgcagagtcagagacttatttgtatttaat 6614041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 153
Target Start/End: Complemental strand, 32664620 - 32664525
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    |||| ||||||||||||||||||||||||||||        ||||||||||||||| ||| | ||  ||||||||| ||||||||||||||||| ||| |    
T  32664620 gtcaaggactaaagtgataacggaagtgcagag--------ttatttgtatttaatcctgagtca-agacctatataacagcgaggtgcagagtgaggaa 32664530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 34088473 - 34088531
Alignment:
Q  46 aatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||| ||| ||||||||||  |||||||||||||||| ||||| ||||||||||||    
T  34088473 aatgtcaaggattaaagtgatagtggaagtgcagagtcagagacttctttgtatttaat 34088531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 25037987 - 25037939
Alignment:
Q  56 actaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||||| |||| ||||||||| ||||| ||||||||||||    
T  25037987 actaaagtgataacgtaagtccagagtcagtgacttctttgtatttaat 25037939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 25043199 - 25043151
Alignment:
Q  56 actaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||||| |||| ||||||||| ||||| ||||||||||||    
T  25043199 actaaagtgataacgtaagtccagagtcagtgacttctttgtatttaat 25043151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 534574 - 534656
Alignment:
Q  58 taaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagag 141  Q
    |||||||||||| |||||| ||||||| |||||| |||||||||||| |||   || | |||||| | ||||||||||||||||    
T  534574 taaagtgataacagaagtgtagagtca-ggacttgtttgtatttaatcctgaatcaagaacctatgtaacagcgaggtgcagag 534656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 3117757 - 3117710
Alignment:
Q  57 ctaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    |||||||||||||||||||| |||||||| || || ||||||||||||    
T  3117757 ctaaagtgataacggaagtggagagtcagagatttctttgtatttaat 3117710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 8975269 - 8975166
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaag 154  Q
    |||||||||||||||| ||||||| | ||| |||||  ||| ||||||||  || | || |||||| | ||||| | ||||||| ||| |||||||||||    
T  8975269 gactaaagtgataacgaaagtgcatattcatggactactttatatttaatcttgagtcagggacctttgtgacaacaaggtgcaaagttagggaccaaag 8975170  T
Q  155 tgac 158  Q
    ||||    
T  8975169 tgac 8975166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 50107215 - 50107265
Alignment:
Q  54 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||||||||||||||| | |||| ||||  ||||||||||||    
T  50107215 ggactaaagtgataacggaagtgcacattcagagactattttgtatttaat 50107265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 1001264 - 1001164
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaag 154  Q
    ||||||| ||||||| |||||||| | |||| ||||  |||||||||||| | | | ||||||||| | || || ||||||||| ||||| |||| ||||    
T  1001264 gactaaactgataacagaagtgcacattcagagactactttgtatttaatcccgagtcatggacctttgtggcaacgaggtgcaaagtcatggactaaag 1001165  T
Q  155 t 155  Q
    |    
T  1001164 t 1001164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 53771062 - 53771165
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaag 154  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | || |||||||| ||||| |||||||||||||||||||| ||||    
T  53771062 gactaaagtgataacggaagtgcagagtcaggggcttctttgtatttaattctgagtcagggacctatgtgacaacgaggtgcagagtcagggactaaag 53771161  T
Q  155 tgac 158  Q
    ||||    
T  53771162 tgac 53771165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 47878491 - 47878600
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | | | || |||||||| | |||||||||||||||||||||||    
T  47878491 gtcatggactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatccagagtcagggacctatgtaacagcgaggtgcagagtcaggga 47878590  T
Q  149 ccaaagtgac 158  Q
     |||||||||    
T  47878591 tcaaagtgac 47878600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 42278193 - 42278056
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacct 120  Q
    ||||||||||||||||||       || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | | || ||||||    
T  42278193 acatcatcacttaacagatttttttaacgtcagggattaaagtgataacggaagtgcagagtcaggaacttatttgtatttaatcccgagtcagggacct 42278094  T
Q  121 atatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    || ||||||| || |||||| ||| |||| ||||||||    
T  42278093 atgtgacagcaagctgcagaatcaaggactaaagtgac 42278056  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 47874675 - 47874571
Alignment:
Q  54 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaa 153  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||  || | || |||||||| ||| |||||| |||||| |||| ||| |||    
T  47874675 ggactaaagtgataacggaagtgcagaatcagggacttatttgtatttaatcttgagtcagggacctatgtgatagcgagctgcagaatcagagactaaa 47874576  T
Q  154 gtgac 158  Q
    |||||    
T  47874575 gtgac 47874571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 31844828 - 31844729
Alignment:
Q  59 aaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    |||||||||| ||||||| ||||| |||||||| |||||||||||| ||| | || |||||||| ||||||||||||||||||  |||||| ||||||||    
T  31844828 aaagtgataagggaagtgtagagttagggacttgtttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcagagctagggactaaagtgac 31844729  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 26172954 - 26173058
Alignment:
Q  54 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaa 153  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  || | || |||||| | ||||||  ||||||| |||  ||||| |||    
T  26172954 ggactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcttgagtcaaggacctttctgacagtaaggtgcatagttggggactaaa 26173053  T
Q  154 gtgac 158  Q
    |||||    
T  26173054 gtgac 26173058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 39869036 - 39868932
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||| |||||||||||||||||||||||||||||  | |||| ||||||||||||| || | || |||||| | | |||||||||||||||||||| ||    
T  39869036 gtcagagactaaagtgataacggaagtgcagagtc--gaacttgtttgtatttaattatgagtcagggacctttgtaacagcgaggtgcagagtcagaga 39868939  T
Q  149 ccaaagt 155  Q
    | |||||    
T  39868938 ctaaagt 39868932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 53770443 - 53770340
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaag 154  Q
    ||||| |||||||| |||||||||||||||  ||||| |||||||||||||||| | || | |||||| |||  ||||||||||||||||| ||| ||||    
T  53770443 gactagagtgataatggaagtgcagagtcatagacttctttgtatttaattctgagtcaggaacctatgtgaatgcgaggtgcagagtcagagactaaag 53770344  T
Q  155 tgac 158  Q
    ||||    
T  53770343 tgac 53770340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 48740027 - 48740136
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||||||||||||||||||| ||||||||||||  ||||||| ||||||||||||| || | || ||| |||  |||||  ||||||||||| || |||    
T  48740027 gtcagggactaaagtgataacagaagtgcagagttggggacttctttgtatttaattatgagtcagggatctacgtgacaatgaggtgcagagacatgga 48740126  T
Q  149 ccaaagtgac 158  Q
    | ||||||||    
T  48740127 ctaaagtgac 48740136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 4703221 - 4703333
Alignment:
Q  46 aatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcag 145  Q
    |||| ||| |||||||||||||||||||||| | |||||  ||||| |||||||||||||||| |  | |||||||| |||||||||| || ||||||||    
T  4703221 aatgccagagactaaagtgataacggaagtgtacagtcaaagacttctttgtatttaattctgagttagggacctatgtgacagcgagatgtagagtcag 4703320  T
Q  146 ggaccaaagtgac 158  Q
      || ||||||||    
T  4703321 taactaaagtgac 4703333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 54574532 - 54574448
Alignment:
Q  58 taaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagt 142  Q
    ||||||||||||||||||||||||| | | ||||||||||||||||| ||| | ||  ||||||| |||||||||| ||||||||    
T  54574532 taaagtgataacggaagtgcagagttaagaacttatttgtatttaatcctgagtcagagacctatgtgacagcgagatgcagagt 54574448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 26685426 - 26685524
Alignment:
Q  46 aatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcag 145  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||| | |||||||||      |  | |||||||| ||||||||||||||||||||||    
T  26685426 aatgtcagagactaaagtgataacggaagtgcatagtcaaggacttctatgtatttaa-----agtgagggacctatgtgacagcgaggtgcagagtcag 26685520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 50694893 - 50694809
Alignment:
Q  21 acatcatcacttaacagannnnnnnaatgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatt 105  Q
    ||||||||||||||||||       || |||||||||||||| ||||||||||||||||| ||||  |||||||| |||||||||    
T  50694893 acatcatcacttaacagaattttttaacgtcagggactaaagagataacggaagtgcagaatcagaaacttatttatatttaatt 50694809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 4701880 - 4701826
Alignment:
Q  50 tcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    |||||||||||||||||| |||||||||| |||| ||||||| ||||||||||||    
T  4701880 tcagggactaaagtgatagcggaagtgcatagtcggggacttctttgtatttaat 4701826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 26170751 - 26170701
Alignment:
Q  54 ggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||||| ||||||||||||| ||| |||||||||||||||||    
T  26170751 ggactaaagtgataatggaagtgcagagtaaggaacttatttgtatttaat 26170701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 19050348 - 19050299
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  19050348 gactaaagtgataacggaagtgcagagtccgagacttctttgtatttaat 19050299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 21621938 - 21621884
Alignment:
Q  50 tcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||||||||||||||||||||| | |||  ||||  ||||||||||||    
T  21621938 tcagggactaaagtgataacggaagtgcacattcaatgactattttgtatttaat 21621884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 54574822 - 54574867
Alignment:
Q  59 aaagtgataacggaagtgcagagtcagggacttatttgtatttaat 104  Q
    ||||||||||| |||||||||||| || || |||||||||||||||    
T  54574822 aaagtgataacagaagtgcagagttagagatttatttgtatttaat 54574867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 116170 - 116062
Alignment:
Q  50 tcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggac 149  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | || |||||||| |||||||||| |||||| | ||| ||    
T  116170 tcagggactaaagtgataacggaagtgcatagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgagctgcagaatgaggaac 116071  T
Q  150 caaagtgac 158  Q
     ||||||||    
T  116070 taaagtgac 116062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 31219070 - 31218962
Alignment:
Q  50 tcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggac 149  Q
    ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||| |  | |||||||| |||||||||||||||||||||| ||     
T  31219070 tcagggattaaagtgataacggaagtgcagagtcaggaacttctttgtatttaatcctgagttaaggacctatgtgacagcgaggtgcagagtcagagat 31218971  T
Q  150 caaagtgac 158  Q
     ||||||||    
T  31218970 taaagtgac 31218962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 30748109 - 30748006
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaag 154  Q
    |||||||||||||||| ||||| |||||||| ||||| |||||||||||| ||  | || |||||||| ||||||||||||||||| |||||||| ||||    
T  30748109 gactaaagtgataacgaaagtgtagagtcagagacttgtttgtatttaatcctaagtcagggacctatgtgacagcgaggtgcagaatcagggactaaag 30748010  T
Q  155 tgac 158  Q
    ||||    
T  30748009 tgac 30748006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 31219167 - 31219276
Alignment:
Q  49 gtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcaggga 148  Q
    ||||| ||||||||||||||||||||||  |||||||| |||| |||||||||||| ||| |  |  ||||||| |||||||||||||||||||||||||    
T  31219167 gtcagagactaaagtgataacggaagtgtcgagtcaggaacttctttgtatttaatcctgagttaatgacctatgtgacagcgaggtgcagagtcaggga 31219266  T
Q  149 ccaaagtgac 158  Q
      ||||||||    
T  31219267 ttaaagtgac 31219276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 5709 - 5656
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctg 108  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  5709 gactaaagtgataacggaagtgtagagtcagggacttctttgtatttaattctg 5656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 6264 - 6357
Alignment:
Q  56 actaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggac 149  Q
    |||||||||||||||||||| ||| ||||  || || ||| ||||||||||||   ||||||||| ||||| ||||| ||||||||||| ||||    
T  6264 actaaagtgataacggaagtacagtgtcatcgatttctttatatttaattctgaatcatggacctctatgatagcgaagtgcagagtcaaggac 6357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 79183 - 79092
Alignment:
Q  55 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagg 146  Q
    ||||||||||||| |||| ||||| ||||| |||||| ||| ||||||||  || | || |||||||| |||||||||||||||||||||||    
T  79183 gactaaagtgatatcggaggtgcaaagtcaaggacttctttttatttaatcatgagtcaaggacctatgtgacagcgaggtgcagagtcagg 79092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 74331 - 74429
Alignment:
Q  60 aagtgataacggaagtgcagagtcagggacttatttgtatttaattctgggccatggacctatatgacagcgaggtgcagagtcagggaccaaagtgac 158  Q
    |||||||| | || ||| ||||||| |||||| ||||||||||||  || |  | |||||||| |||||| ||| ||||||||||||||| ||| ||||    
T  74331 aagtgatatcagaggtgtagagtcaaggacttctttgtatttaatcatgagttagggacctatgtgacagtgagttgcagagtcagggactaaactgac 74429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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