View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0673_low_70 (Length: 290)

Name: NF0673_low_70
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0673_low_70
NF0673_low_70
[»] chr7 (3 HSPs)
chr7 (169-235)||(12239011-12239077)
chr7 (182-235)||(30982662-30982715)
chr7 (88-136)||(12239120-12239168)
[»] chr3 (2 HSPs)
chr3 (169-235)||(23236468-23236534)
chr3 (89-137)||(20215569-20215617)
[»] chr4 (1 HSPs)
chr4 (169-235)||(841884-841950)
[»] chr2 (1 HSPs)
chr2 (169-235)||(23284563-23284629)


Alignment Details
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 12239077 - 12239011
Alignment:
Q  169 ctaagttaaacgttgtctaaatattccagaggcatccgcaagcagagagatatttagctgaggtgga 235  Q
    ||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  12239077 ctaagctaaacgttgtctagatattccagaggcatccgtaagcagagagatatttagctgaggtgga 12239011  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 30982662 - 30982715
Alignment:
Q  182 tgtctaaatattccagaggcatccgcaagcagagagatatttagctgaggtgga 235  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  30982662 tgtctaaatatcccggaggcatccgcaagcagagagatatttagctgaggtgga 30982715  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 12239168 - 12239120
Alignment:
Q  88 taagtatcatcttattttacttcattatctattttcttaaattttatat 136  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12239168 taagtatcatcttattttacttcgttatctattttcttaaattttatat 12239120  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 23236468 - 23236534
Alignment:
Q  169 ctaagttaaacgttgtctaaatattccagaggcatccgcaagcagagagatatttagctgaggtgga 235  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  23236468 ctaagctaaacgttgtctaaatatcccagaggcatccgcaagcagagagatatttagttgaggtgga 23236534  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 20215569 - 20215617
Alignment:
Q  89 aagtatcatcttattttacttcattatctattttcttaaattttatata 137  Q
    ||||||||||||||||||||||||||| | ||||||| | |||||||||    
T  20215569 aagtatcatcttattttacttcattatttgttttctttagttttatata 20215617  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 841950 - 841884
Alignment:
Q  169 ctaagttaaacgttgtctaaatattccagaggcatccgcaagcagagagatatttagctgaggtgga 235  Q
    ||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  841950 ctaagctaaacgctgtctaaatatcccaaaggcatccgcaagcagagagatatttagctgaggtgga 841884  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 23284629 - 23284563
Alignment:
Q  169 ctaagttaaacgttgtctaaatattccagaggcatccgcaagcagagagatatttagctgaggtgga 235  Q
    ||||| |||||| ||||||||||| ||||||||||| ||||||| ||| ||||||||||||||||||    
T  23284629 ctaagctaaacgctgtctaaatatcccagaggcatctgcaagcaaagatatatttagctgaggtgga 23284563  T

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