View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0673_low_74 (Length: 282)

Name: NF0673_low_74
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0673_low_74
NF0673_low_74
[»] chr4 (7 HSPs)
chr4 (49-214)||(7628496-7628661)
chr4 (39-214)||(7636862-7637037)
chr4 (52-185)||(7615061-7615194)
chr4 (75-214)||(7606070-7606209)
chr4 (109-185)||(7656312-7656388)
chr4 (100-176)||(39097547-39097623)
chr4 (109-174)||(39075095-39075160)
[»] chr7 (3 HSPs)
chr7 (40-188)||(8936264-8936412)
chr7 (39-214)||(8913735-8913910)
chr7 (106-214)||(8941882-8941990)
[»] chr3 (2 HSPs)
chr3 (109-189)||(8102323-8102403)
chr3 (85-189)||(40147536-40147640)
[»] chr6 (2 HSPs)
chr6 (77-194)||(6500335-6500452)
chr6 (121-175)||(11968807-11968861)
[»] scaffold0190 (1 HSPs)
scaffold0190 (77-175)||(4292-4390)
[»] chr8 (2 HSPs)
chr8 (105-185)||(15196335-15196415)
chr8 (111-173)||(34173991-34174053)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 7e-89; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 49 - 214
Target Start/End: Original strand, 7628496 - 7628661
Alignment:
Q  49 caaattgattttacacacctcacgttgcattagttggacacaacatccacaaattgagggtcatttcccattgcctccaaaatctcgtaaggaagacaga 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7628496 caaattgattttacacacctcacgttgcattagttggacacaacatccacaaattgagggtcatttcccattgcctccaaaatctcgtaaggaagacaga 7628595  T
Q  149 tttgaaggtcaatactaccttcttctattccagcaaatacattaacaagtcctttcattttatatc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7628596 tttgaaggtcaatactaccttcttctattccagcaaatacattaacaagtcctttcattttatatc 7628661  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 39 - 214
Target Start/End: Original strand, 7636862 - 7637037
Alignment:
Q  39 aatattgtatcaaattgattttacacacctcacgttgcattagttggacacaacatccac-aaattgagggtcatttcccattgcctccaaaatctcgta 137  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||  |||||| ||||||||||||||| |||||||||||||       
T  7636862 aatattgtatcatattgattttacacacctcacgctgcattagttggacacaacatccatgaaattg-gggtcatttcccattccctccaaaatctcacg 7636960  T
Q  138 aggaagacagatttgaaggtcaatactaccttcttctattccagcaaatacattaacaagtcctttcattttatatc 214  Q
    ||||||||| | ||||||||| |||||||||||||||||||| ||||||||  ||| |||||| || ||||||||||    
T  7636961 aggaagacaaacttgaaggtctatactaccttcttctattccggcaaataccgtaataagtccatttattttatatc 7637037  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 7615061 - 7615194
Alignment:
Q  52 attgattttacacacctcacgttgcattagttggacacaacatccacaaattgagggtcatttcccattgcctccaaaatctcgtaaggaagacagattt 151  Q
    ||||||||||||||| ||| |||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||| |  | |||||| | ||    
T  7615061 attgattttacacacatcatgttgcattagttggacgcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaactt 7615160  T
Q  152 gaaggtcaatactaccttcttctattccagcaaa 185  Q
    |||| || ||||||||||||||||||||||||||    
T  7615161 gaagatctatactaccttcttctattccagcaaa 7615194  T

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Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 7606070 - 7606209
Alignment:
Q  75 gcattagttggacacaacatccacaaattgagggtcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttct 174  Q
    ||||||||||| ||| |||||||  || || |||||| |||||||||||||||||| || |||||||||||| | |||||||||||||||||||||||||    
T  7606070 gcattagttggtcacgacatccatgaaatgtgggtcacttcccattgcctccaaaaccttgtaaggaagacatacttgaaggtcaatactaccttcttct 7606169  T
Q  175 attccagcaaatacattaacaagtcctttcattttatatc 214  Q
    ||||||||||||||||| |||| ||| || ||||||||||    
T  7606170 attccagcaaatacatttacaattccatttattttatatc 7606209  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 7656388 - 7656312
Alignment:
Q  109 tcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctattccagcaaa 185  Q
    ||||||||||||||||||||||||| |||||||||||| | |||||||||||| ||| |||||||||||||||||||    
T  7656388 tcatttcccattgcctccaaaatcttgtaaggaagacacacttgaaggtcaatgctagcttcttctattccagcaaa 7656312  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 39097547 - 39097623
Alignment:
Q  100 aattgagggtcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctat 176  Q
    |||||||||||||||||||| ||||||||||| || |||| ||| || | || ||  ||||||||||||||||||||    
T  39097547 aattgagggtcatttcccatagcctccaaaatatcataagaaaggcaaacttcaacatcaatactaccttcttctat 39097623  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 39075095 - 39075160
Alignment:
Q  109 tcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttct 174  Q
    ||||||||||| ||||||||||| || ||||||||||| | |||||  |||| |||||||||||||    
T  39075095 tcatttcccatagcctccaaaatatcataaggaagacaaacttgaatatcaacactaccttcttct 39075160  T

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Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 8936412 - 8936264
Alignment:
Q  40 atattgtatcaaattgattttacacacctcacgttgcattagttggacacaacatccacaaattgagggtcatttcccattgcctccaaaatctcgtaag 139  Q
    |||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||| || |    
T  8936412 atattgtaccaaattgattttacacacatcatgttgcattagttggacgcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatatg 8936313  T
Q  140 gaagacagatttgaaggtcaatactaccttcttctattccagcaaatac 188  Q
    ||||||| | |||||||||||||||||||||||||||||| ||||||||    
T  8936312 gaagacaaacttgaaggtcaatactaccttcttctattccggcaaatac 8936264  T

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Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 39 - 214
Target Start/End: Complemental strand, 8913910 - 8913735
Alignment:
Q  39 aatattgtatcaaattgattttacacacctcacgttgcattagttggacacaacatcca-caaattgagggtcatttcccattgcctccaaaatctcgta 137  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||  |||||| ||||||||||||||| |||||||||||||       
T  8913910 aatattgtatcatattgattttacacacctcacgctgcattagttggacacaacatccatgaaattg-gggtcatttcccattccctccaaaatctcacg 8913812  T
Q  138 aggaagacagatttgaaggtcaatactaccttcttctattccagcaaatacattaacaagtcctttcattttatatc 214  Q
    ||||||||| | ||||||||| ||| ||||||||||||||||  |||||||  ||| |||||| || ||||||||||    
T  8913811 aggaagacaaacttgaaggtctataataccttcttctattccgacaaatactgtaataagtccatttattttatatc 8913735  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 8941990 - 8941882
Alignment:
Q  106 gggtcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctattccagcaaatacattaacaagtcctttca 205  Q
    |||||| |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||| ||| || |    
T  8941990 gggtcacttcccattgcctccaaaacctcgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacatttacaattccattta 8941891  T
Q  206 ttttatatc 214  Q
    |||||||||    
T  8941890 ttttatatc 8941882  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 8102323 - 8102403
Alignment:
Q  109 tcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctattccagcaaataca 189  Q
    ||||||||||||||||||||||||| || ||||||||| | ||||||||| ||||||||||||||||||||||||||||||    
T  8102323 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaataca 8102403  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 40147640 - 40147536
Alignment:
Q  85 gacacaacatccacaaattgagggtcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctattccagcaa 184  Q
    |||||||||||||  || | | ||||||||||||||||||||||||||| || ||||||||| | ||||| ||| || |||||||||||| |||||||||    
T  40147640 gacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaa 40147541  T
Q  185 ataca 189  Q
    |||||    
T  40147540 ataca 40147536  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 6500335 - 6500452
Alignment:
Q  77 attagttggacacaacatccacaaattgagggtcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctat 176  Q
    |||||||||||||| ||||||  || | ||||||||  | |||||| |||||| ||| |||||||||||| | ||||||||| |||||||||| |||| |    
T  6500335 attagttggacacagcatccatgaaattagggtcataactcattgcttccaaagtcttgtaaggaagacaaacttgaaggtctatactaccttattcttt 6500434  T
Q  177 tccagcaaatacattaac 194  Q
    ||||||||||||| ||||    
T  6500435 tccagcaaatacactaac 6500452  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 11968807 - 11968861
Alignment:
Q  121 gcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttcta 175  Q
    ||||||||||||| |||||||||||| | || || ||| ||||||||||||||||    
T  11968807 gcctccaaaatcttgtaaggaagacacacttcaaagtctatactaccttcttcta 11968861  T

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Target: scaffold0190 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 4292 - 4390
Alignment:
Q  77 attagttggacacaacatccacaaattgagggtcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttcta 175  Q
    |||||| |||||||||||||| ||| | ||| |||||||  |||||||||||||| ||  |||||||||| | || |||||| || ||||| |||||||    
T  4292 attagtaggacacaacatccataaactcaggatcatttctaattgcctccaaaatttcacaaggaagacatacttcaaggtccatgctaccatcttcta 4390  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 15196415 - 15196335
Alignment:
Q  105 agggtcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctattccagcaaa 185  Q
    |||||||||||||||  |||||||||||| ||| |||||||| | || || ||| ||||| ||||||||| | ||||||||    
T  15196415 agggtcatttcccatgacctccaaaatcttgtatggaagacacacttcaaagtccatacttccttcttctttaccagcaaa 15196335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 34173991 - 34174053
Alignment:
Q  111 atttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttc 173  Q
    |||||| || ||||||||||| || ||||||||||| | |||||  |||||||||||||||||    
T  34173991 atttccaatagcctccaaaatatcataaggaagacaaacttgaatatcaatactaccttcttc 34174053  T

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