View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_75 (Length: 277)
Name: NF0673_low_75
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_75 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 164 - 277
Target Start/End: Original strand, 44027189 - 44027302
Alignment:
| Q |
164 |
ctcaaattcgagctaaactaaaagttttacattaaataaaaaagtatggcatcagagttttgaacattcctgtgcgccttctagtctcatcaattggtat |
263 |
Q |
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| T |
44027189 |
ctcaaattcgagctaagctaaaagttttacattaaatgaaaaagtatggcatcggagttctgaacattcctatgcaccttctagtcccatcaattggtat |
44027288 |
T |
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| Q |
264 |
catagttaattttt |
277 |
Q |
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|||||||||||||| |
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| T |
44027289 |
catagttaattttt |
44027302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 44027074 - 44027151
Alignment:
| Q |
91 |
cttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgtctcgcttgtatgttactcaa |
168 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
44027074 |
cttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgtctcccttctatgttactcaa |
44027151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 43293772 - 43293659
Alignment:
| Q |
164 |
ctcaaattcgagctaaactaaaagttttacattaaataaaaaagtatggcatcagagttttgaacattcctgtgcgccttctagtctcatcaattggtat |
263 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||| |||||||||| ||||||||||||| |
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| T |
43293772 |
ctcaaattcgagctaagctaaaagttttacattaaatgaaaaagtatggcatcggagttctgaacattcctatgcaccttctagtcccatcaattggtat |
43293673 |
T |
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| Q |
264 |
catagttaattttt |
277 |
Q |
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| T |
43293672 |
catagttaattttt |
43293659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 43293887 - 43293810
Alignment:
| Q |
91 |
cttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgtctcgcttgtatgttactcaa |
168 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
43293887 |
cttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgtctcccttctatgttactcaa |
43293810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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