View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_80 (Length: 272)
Name: NF0673_low_80
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 41975812 - 41975594
Alignment:
| Q |
30 |
tctacaaatcttaatgctttgaaatcaagcatttgccttcagtgtgatacctaacttccaagagaaggtttatagatatgatgagattgcaaacaagtcc |
129 |
Q |
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| T |
41975812 |
tctacaaatcttaatgctttgaaatcaagcatttgccttcagtgtgatacctcacttccaagagaaggtttatagatatgatgagattgcaaacaagtcc |
41975713 |
T |
|
| Q |
130 |
tctttcatcaggggcttccagaggatgatgagttagtgatcctcaaagctaagtaaattcatatacacttgtgtttatgggaaaaattaccattctgcag |
229 |
Q |
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| T |
41975712 |
tctttcatcaggggcttccagaggaggatgagttagtgatcctca-----aagtaaattcatatacacttgtgtttatgggcaaaattaccattctgcag |
41975618 |
T |
|
| Q |
230 |
cttcaagtacaaatttcttgaagtgta |
256 |
Q |
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| T |
41975617 |
cttca---acaaattccttgaagtgta |
41975594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 56 - 266
Target Start/End: Original strand, 1222465 - 1222667
Alignment:
| Q |
56 |
aagcatttgccttcagtgtgatacctaacttccaagagaaggtttatagatatgatgagattgcaaacaagtcctctttcatcaggggcttccagaggat |
155 |
Q |
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| T |
1222465 |
aagcatttgccttcggtgtgatacctcacttccaagagaaggtttatagatatgatgagattgcaaacaagtcctctttcaacaggggcttccagaggat |
1222564 |
T |
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| Q |
156 |
gatgagttagtgatcctcaaagctaagtaaattcatatacacttgtgtttatgggaaaaattaccattctgcagcttcaagtacaaatttcttgaagtgt |
255 |
Q |
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| T |
1222565 |
gatgagttagtgatcctca-----aagtaaattcatatacacttgtgtttatgggaaaaattaccattctgcagcttca---acaaattccttgaagtgt |
1222656 |
T |
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| Q |
256 |
atattattgga |
266 |
Q |
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| T |
1222657 |
atattattgga |
1222667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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