View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0673_low_81 (Length: 272)

Name: NF0673_low_81
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0673_low_81
NF0673_low_81
[»] chr3 (7 HSPs)
chr3 (1-244)||(22808205-22808448)
chr3 (107-207)||(7657967-7658067)
chr3 (107-214)||(2033465-2033572)
chr3 (107-207)||(11404269-11404369)
chr3 (102-161)||(32012965-32013024)
chr3 (141-213)||(17369778-17369851)
chr3 (139-207)||(28733849-28733916)
[»] chr1 (5 HSPs)
chr1 (1-233)||(9752602-9752834)
chr1 (100-217)||(34028581-34028696)
chr1 (108-207)||(43577987-43578085)
chr1 (107-195)||(20997110-20997198)
chr1 (107-195)||(22052350-22052438)
[»] chr6 (1 HSPs)
chr6 (5-194)||(13503296-13503487)
[»] chr5 (3 HSPs)
chr5 (108-207)||(33930629-33930727)
chr5 (100-155)||(34476561-34476616)
chr5 (107-162)||(29318268-29318323)
[»] chr4 (4 HSPs)
chr4 (108-207)||(16918793-16918891)
chr4 (107-195)||(43236151-43236239)
chr4 (107-166)||(14627194-14627253)
chr4 (109-168)||(19099102-19099161)
[»] scaffold0039 (1 HSPs)
scaffold0039 (107-207)||(33625-33725)
[»] chr7 (1 HSPs)
chr7 (107-214)||(18271800-18271907)
[»] scaffold0401 (2 HSPs)
scaffold0401 (107-162)||(11954-12009)
scaffold0401 (107-162)||(16102-16157)
[»] scaffold0005 (1 HSPs)
scaffold0005 (107-166)||(190130-190189)
[»] chr8 (2 HSPs)
chr8 (107-162)||(15183468-15183523)
chr8 (116-166)||(18925473-18925523)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 22808448 - 22808205
Alignment:
Q  1 tctcatgtttatagagaaggaaatacctgtgcagatgctttagctaacataggattaagcttgaacacttttgtttattgtagcactattccattgaatg 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  22808448 tctcatgtttgtagagaaggaaatacctgtgcagatgctttagctaacataggattaagcttgaacacttttgtttattatagcactattccattggatg 22808349  T
Q  101 ttaggggtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaa 200  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22808348 ttaggggttattatgttaaaaataggcttggttgacctaattttaggtttactcactcttgagaaggtcttcgtttggtcccccttctccttttttgtaa 22808249  T
Q  201 caatcttcttttggtatggattttgtgttttgtggctctctgct 244  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  22808248 caatcttcttttggtatggattttgtgttttgtagctctctgct 22808205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 207
Target Start/End: Original strand, 7657967 - 7658067
Alignment:
Q  107 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatct 206  Q
    |||||||||||||||||| | | ||||| |||||||||||||||| |||||||||||||| | || || | ||||||||||||  |||||||| ||||||    
T  7657967 gtgattatgttaaaaataggttaggttggcctaattttaggtttaatcactcttgagaaggttttggtattgtcccccttctctctttttgtatcaatct 7658066  T
Q  207 t 207  Q
    |    
T  7658067 t 7658067  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 214
Target Start/End: Complemental strand, 2033572 - 2033465
Alignment:
Q  107 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatct 206  Q
    |||||||| ||||||||| ||| ||||| |||||||||||||||| |||||||||||||| | || || | ||||||||||||  |||||||| | ||||    
T  2033572 gtgattatattaaaaataggctaggttggcctaattttaggtttaatcactcttgagaaggttttggtatagtcccccttctctctttttgtatctatct 2033473  T
Q  207 tcttttgg 214  Q
    | ||||||    
T  2033472 ttttttgg 2033465  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 207
Target Start/End: Original strand, 11404269 - 11404369
Alignment:
Q  107 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatct 206  Q
    ||||||||||||||||||   | ||||| |||||||||||||||| |||||||||||||| | || || |  |||||||||||  |||||||| ||||||    
T  11404269 gtgattatgttaaaaatagaataggttggcctaattttaggtttaatcactcttgagaaggttttggtataatcccccttctctctttttgtatcaatct 11404368  T
Q  207 t 207  Q
    |    
T  11404369 t 11404369  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 32012965 - 32013024
Alignment:
Q  102 taggggtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttg 161  Q
    |||| |||||||||||||||||| | ||||||| | |||||||||||||| |||||||||    
T  32012965 taggagtgattatgttaaaaatagggttggttggcgtaattttaggtttaatcactcttg 32013024  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 17369851 - 17369778
Alignment:
Q  141 ttttaggtttactcactcttgagaagatcttcgtttggtcccccttctc-cttttttgtaacaatcttcttttg 213  Q
    ||||||||||| |||| | ||||||| | || |||||||||||||||||  |||||| |||||||||| |||||    
T  17369851 ttttaggtttaatcacccctgagaaggttttggtttggtcccccttctcttttttttttaacaatctttttttg 17369778  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 28733849 - 28733916
Alignment:
Q  139 aattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatctt 207  Q
    ||||||||||||| |||||||||||||| | || |  | ||||||||||| |||||||||| |||||||    
T  28733849 aattttaggtttaatcactcttgagaaggtattggcctagtcccccttct-cttttttgtatcaatctt 28733916  T

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Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 9752602 - 9752834
Alignment:
Q  1 tctcatgtttatagagaaggaaatacctgtgcagatgctttagctaacataggattaagcttgaacacttttgtttattgtagcactattccattgaatg 100  Q
    ||||||||  ||||||||||||||||||||||||||||||| ||||||||||| |||||  | |||||||| ||||||| |||   |||||||||| | |    
T  9752602 tctcatgtgcatagagaaggaaatacctgtgcagatgctttggctaacatagggttaagtgtaaacactttcgtttattttagtgttattccattggagg 9752701  T
Q  101 ttaggggtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaa 200  Q
    ||| |  |||||||||||||| || ||||||||| |||||||||||||||| | | |||||||||| |||| | |||| ||||||||| |||||||||||    
T  9752702 ttaagactgattatgttaaaattaggcttggttggcctaattttaggtttaattaatcttgagaaggtcttggcttggccccccttcttcttttttgtaa 9752801  T
Q  201 caatcttcttttggtatggattttgtgttttgt 233  Q
    ||||||||||||| |||||| ||||||| ||||    
T  9752802 caatcttcttttgatatggaatttgtgtgttgt 9752834  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 34028696 - 34028581
Alignment:
Q  100 gttaggggtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgta 199  Q
    |||||| |||||||||||||||||| | ||||||| |||||||||||||||| ||||| |||||||| |  | |||||||||||| ||| ||||||||||    
T  34028696 gttaggagtgattatgttaaaaataggtttggttggcctaattttaggtttaatcactattgagaaggttatggtttggtcccccatct-cttttttgta 34028598  T
Q  200 acaatcttcttttggtat 217  Q
    |||||||| |||||||||    
T  34028597 acaatctt-ttttggtat 34028581  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 43577987 - 43578085
Alignment:
Q  108 tgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatctt 207  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||| | || || | ||||||||||||  |||||||| |||||||    
T  43577987 tgattatgttaaaaataggctaggttggcctaattttaggtttaatcactcttgagaaggt-ttggtatagtcccccttctctctttttgtatcaatctt 43578085  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 20997110 - 20997198
Alignment:
Q  107 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttt 195  Q
    |||||||||||||||||| |||||| || |||||||||||||||| |||||||||||||| | || || | | ||||||||| ||||||    
T  20997110 gtgattatgttaaaaataggcttgggtggcctaattttaggtttaatcactcttgagaaggttttggtatagccccccttcttcttttt 20997198  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 22052350 - 22052438
Alignment:
Q  107 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttt 195  Q
    |||||||||||||||||| |||||| || |||||||||||| ||| |||||||||||||| | || || | |||||| |||| ||||||    
T  22052350 gtgattatgttaaaaataggcttgggtggcctaattttaggcttaatcactcttgagaaggttttggtatagtccccattcttcttttt 22052438  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 13503296 - 13503487
Alignment:
Q  5 atgtttatagagaaggaaatacctgtgcagatgctttagctaacataggattaagcttgaacacttttgtttattgtagcactattccattgaatgttag 104  Q
    |||| ||| ||||||||||||| |||   |||||||||| ||| ||||| ||||| |||||||| ||| |||||| | ||||||||| |||  | |||||    
T  13503296 atgtatatggagaaggaaatacttgtattgatgctttagttaatataggtttaagtttgaacacctttttttattattgcactattcaattacaagttag 13503395  T
Q  105 gggtgattatgttaaaaataagcttggttgacctaattttaggtttact--cactcttgagaagatcttcgtttggtcccccttctcctttt 194  Q
      |||||||||||||||||| | |||||||  |||||||| ||||||||  ||||||||||||| ||||  |||||||| |||||| |||||    
T  13503396 aagtgattatgttaaaaataggtttggttggtctaatttttggtttactcacactcttgagaaggtcttgatttggtcctccttcttctttt 13503487  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 33930727 - 33930629
Alignment:
Q  108 tgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatctt 207  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||| | || || | ||||||||||||  |||||||| |||||||    
T  33930727 tgattatgttaaaaataggctaggttggcctaattttaggtttaatcactcttgagaaggt-ttggtatagtcccccttctctctttttgtatcaatctt 33930629  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 34476561 - 34476616
Alignment:
Q  100 gttaggggtgattatgttaaaaataagcttggttgacctaattttaggtttactca 155  Q
    |||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||    
T  34476561 gttaggagtgattatgataaaagtaagattggttgacctaattttaggtttactca 34476616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 29318268 - 29318323
Alignment:
Q  107 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttga 162  Q
    |||||||||||||||||| |||||| || |||| ||||||||||| ||||||||||    
T  29318268 gtgattatgttaaaaataggcttgggtggcctagttttaggtttaatcactcttga 29318323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 16918891 - 16918793
Alignment:
Q  108 tgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatctt 207  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||| | || || | ||||||||||||  |||||||| |||||||    
T  16918891 tgattatgttaaaaataggctaggttggcctaattttaggtttaatcactcttgagaaggt-ttggtatagtcccccttctctctttttgtatcaatctt 16918793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 43236151 - 43236239
Alignment:
Q  107 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttt 195  Q
    |||||||||||||||||| |||||| || |||||||||||||||| |||||||||||||| | || || | |||| |||||| ||||||    
T  43236151 gtgattatgttaaaaataggcttgggtggcctaattttaggtttaatcactcttgagaaggttttggtatagtcctccttcttcttttt 43236239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 14627253 - 14627194
Alignment:
Q  107 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaag 166  Q
    |||||||||||||||||| ||| || || |||| ||||||||||| ||||||||||||||    
T  14627253 gtgattatgttaaaaataggctaggatggcctacttttaggtttaatcactcttgagaag 14627194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 19099161 - 19099102
Alignment:
Q  109 gattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagat 168  Q
    |||||||||||||||||||| |||||  |||||||||||| || ||| ||||||||||||    
T  19099161 gattatgttaaaaataagctcggttggtctaattttaggtgtaatcattcttgagaagat 19099102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 33725 - 33625
Alignment:
Q  107 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatct 206  Q
    ||||||||| |||||||| |||  |||| |||| ||||||||||| |||| | ||||||| | || ||||| ||||||||||| ||||||||||||||||    
T  33725 gtgattatgataaaaataggctaagttggcctagttttaggtttaatcacccctgagaaggttttggtttgctcccccttctctttttttgtaacaatct 33626  T
Q  207 t 207  Q
    |    
T  33625 t 33625  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 214
Target Start/End: Complemental strand, 18271907 - 18271800
Alignment:
Q  107 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatct 206  Q
    |||||||| ||||||||| ||| ||||| |||||||||||||||| |||||||||||||| | || || |  |||||||||||  |||||||| | ||||    
T  18271907 gtgattatattaaaaataggctaggttggcctaattttaggtttaatcactcttgagaaggttttggtataatcccccttctctctttttgtatctatct 18271808  T
Q  207 tcttttgg 214  Q
    | ||||||    
T  18271807 ttttttgg 18271800  T

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Target: scaffold0401 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 12009 - 11954
Alignment:
Q  107 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttga 162  Q
    |||||||||||||||||| |||||| || |||| ||||||||||| ||||||||||    
T  12009 gtgattatgttaaaaataggcttgggtggcctagttttaggtttaatcactcttga 11954  T

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Target: scaffold0401; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 16157 - 16102
Alignment:
Q  107 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttga 162  Q
    |||||||||||||||||| |||||| || |||| ||||||||||| ||||||||||    
T  16157 gtgattatgttaaaaataggcttgggtggcctagttttaggtttaatcactcttga 16102  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 190130 - 190189
Alignment:
Q  107 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaag 166  Q
    |||||||||||||||||| ||| || || |||| ||||||||||| ||||||||||||||    
T  190130 gtgattatgttaaaaataggctaggatggcctacttttaggtttaatcactcttgagaag 190189  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 15183468 - 15183523
Alignment:
Q  107 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttga 162  Q
    |||||||||||||||||| |||||| || |||| ||||||||||| ||||||||||    
T  15183468 gtgattatgttaaaaataggcttgggtggcctagttttaggtttaatcactcttga 15183523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 18925473 - 18925523
Alignment:
Q  116 ttaaaaataagcttggttgacctaattttaggtttactcactcttgagaag 166  Q
    |||||||||  |||||||| |||||||||||||| |||||| |||||||||    
T  18925473 ttaaaaatagacttggttggcctaattttaggttaactcacacttgagaag 18925523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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