View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_9 (Length: 469)
Name: NF0673_low_9
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 201 - 459
Target Start/End: Original strand, 40235579 - 40235836
Alignment:
| Q |
201 |
ctccaacatattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaata |
300 |
Q |
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| T |
40235579 |
ctccaacatattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaata |
40235678 |
T |
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| Q |
301 |
tgtctgaaaaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagcttgcgaccaatagaacgtgct |
400 |
Q |
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| T |
40235679 |
tgtctgaaaa-caaggaagtcattgtcctctaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagcttgcgaccaatagaacgtgct |
40235777 |
T |
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| Q |
401 |
ttgacatgccaatctgttcctctatgatcccttaggataaaatatttcaataccctttg |
459 |
Q |
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| T |
40235778 |
ttgacatgccaatctgttcctctatgatcccttaggataaaatatttcaataccctttg |
40235836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 209 - 459
Target Start/End: Complemental strand, 17461042 - 17460793
Alignment:
| Q |
209 |
tattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaatatgtctgaa |
308 |
Q |
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| T |
17461042 |
tattagtattttcctcctcgtccattaccttcatcttttgacacattgatgatagttcaaggattttgaacttgaatacattgttttcaatatgcgtgaa |
17460943 |
T |
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| Q |
309 |
aaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagcttgcgaccaatagaacgtgctttgacatg |
408 |
Q |
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| T |
17460942 |
aa-caaggaagtcattgtcctctaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagtttgttgccaatagaacacactttgacatg |
17460844 |
T |
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| Q |
409 |
ccaatctgttcctctatgatcccttaggataaaatatttcaataccctttg |
459 |
Q |
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| T |
17460843 |
ccaatcacttcctctatgatctcttaggataaaatccttcaatagcctttg |
17460793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 202 - 443
Target Start/End: Complemental strand, 17454832 - 17454592
Alignment:
| Q |
202 |
tccaacatattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaatat |
301 |
Q |
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| T |
17454832 |
tccatcatattattattttcctcatcttccatcaccggcatcttttcacacattgatgatagttcaagaattttgaatttgaatacattgttttcaatat |
17454733 |
T |
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| Q |
302 |
gtctgaaaaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagcttgcgaccaatagaacgtgctt |
401 |
Q |
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| T |
17454732 |
gagt-aaaaacaaggaagtcattctccactaaacaattttcttgtctaaatttcttccagccatcatcaaaatagaactcgtcaccaatacgacgcgctt |
17454634 |
T |
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| Q |
402 |
tgacatgccaatctgttcctctatgatcccttaggataaaat |
443 |
Q |
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| T |
17454633 |
tgacataccaatctcttcttctacgatctcttaggataaaat |
17454592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 207 - 443
Target Start/End: Original strand, 17394002 - 17394237
Alignment:
| Q |
207 |
catattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaatatgtctg |
306 |
Q |
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| T |
17394002 |
catattgttattttcctccacgacacttaccttcttcttttcacacatcgatgatagttcaagaattttgaacctgaatacggtattttcaatatgtgt- |
17394100 |
T |
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| Q |
307 |
aaaaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagcttgcgaccaatagaacgtgctttgaca |
406 |
Q |
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|||||||||||| |||| |||| |||||||||||| ||||| ||| | ||||| ||| | ||||||||||||| |||||| ||| ||||||||| |
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| T |
17394101 |
aaaaacaaggaaatcatcctcctctaaagaattttcctctctaaattgcttccagccaccgtcaaaataaagctcatcgccaataagacgagctttgaca |
17394200 |
T |
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| Q |
407 |
tgccaatctgttcctctatgatcccttaggataaaat |
443 |
Q |
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| T |
17394201 |
tgccaatctcttcctctacgatctcttaggataaaat |
17394237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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