View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0673_low_90 (Length: 262)
Name: NF0673_low_90
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_90 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 262
Target Start/End: Original strand, 12154757 - 12154989
Alignment:
| Q |
30 |
cctattattgagtccaccctcaataattttaaccaagccgaagaactacaaaggctcgctgatgatcacttgaagtacattcacaaaaagattaaagaca |
129 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12154757 |
cctattattgagtcgaccctcaataattttaaccaagccgaagaactacaaaggctcgctgatgatcacttgaagtacattcgcaaaaagattaaagaca |
12154856 |
T |
|
| Q |
130 |
aaaataccaaccttgttaaactttgggatgaagatttccacattgatcaacgcatttgttatcttgaacatgaacttcaaattgctaggaataaaaaggc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12154857 |
aaaataccaaccttgttaaactttgggatgaagatttccacattgatcaacgcatttgttatcttgaacatgaacttcaaattgctaggaataaaaaggc |
12154956 |
T |
|
| Q |
230 |
agatatttcagaagcccttgatatggagatggc |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
12154957 |
agatatttcagaagcccttgatatggagatggc |
12154989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 958 times since January 2019
Visitors: 4400