View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673_low_91 (Length: 261)
Name: NF0673_low_91
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673_low_91 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 51993256 - 51993426
Alignment:
| Q |
38 |
ggtttgcactgtcctattttatacatcactttgaattccaattgccgtctcatttccnnnnnnnnnnnnngggcctgcgtgtgttcttttaattacttgg |
137 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51993256 |
ggtttgcactgccctattttatacatcacgttgaattccaattgccgtctcatttccttt----------gggcctgcgtgtgttcttttaattacttgg |
51993345 |
T |
|
| Q |
138 |
gcctcaaagtctggattcatttcttttctcacactactcacttctccattttggctcggcttatattatataatctgaacc |
218 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51993346 |
gcctcaaagtctggattcatttcttttctcacgctactcacttctccattttggctcggcttatattatataatctgaacc |
51993426 |
T |
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