View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0673_low_99 (Length: 253)

Name: NF0673_low_99
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0673_low_99
NF0673_low_99
[»] chr5 (2 HSPs)
chr5 (1-233)||(24186295-24186527)
chr5 (5-59)||(39176283-39176337)
[»] chr3 (3 HSPs)
chr3 (1-226)||(16216195-16216418)
chr3 (1-195)||(13921002-13921194)
chr3 (1-179)||(20905856-20906031)
[»] chr7 (5 HSPs)
chr7 (32-226)||(11917218-11917409)
chr7 (40-220)||(23221865-23222045)
chr7 (2-114)||(10058287-10058398)
chr7 (5-59)||(18147802-18147856)
chr7 (10-62)||(11508913-11508966)
[»] chr8 (1 HSPs)
chr8 (1-138)||(31215866-31216003)
[»] chr2 (5 HSPs)
chr2 (1-190)||(6875222-6875410)
chr2 (1-114)||(6880738-6880851)
chr2 (142-195)||(6880852-6880905)
chr2 (8-88)||(32624546-32624626)
chr2 (1-63)||(27538065-27538128)
[»] chr4 (6 HSPs)
chr4 (1-106)||(31595341-31595445)
chr4 (1-105)||(22911000-22911103)
chr4 (1-105)||(22967419-22967522)
chr4 (1-91)||(31594945-31595034)
chr4 (17-111)||(22224879-22224973)
chr4 (13-114)||(31597496-31597597)
[»] chr6 (2 HSPs)
chr6 (5-59)||(19769227-19769281)
chr6 (1-63)||(26278827-26278889)
[»] chr1 (2 HSPs)
chr1 (5-59)||(12786074-12786128)
chr1 (1-53)||(22049655-22049707)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 24186527 - 24186295
Alignment:
Q  1 tatatgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatataagaaaaagtgag 100  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||    
T  24186527 tatatgtttgattttcgtttctgaattatattgttttcatgttaaattcgtgatttaaatatgatgatgttgttctttggaatatataagaagaagtgag 24186428  T
Q  101 taaaaatcatggaactggagatatagaatgagattttaaggtgttggtgtgttaatgagaattgatcatataaaaaattaatgttaatggataaatggtg 200  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  24186427 taaaaatcatggaattggagatatagaatgaggttttaaggtgttggtgtgttaatgagaattgatcatatgaaaaattaatgttcatggataaatggtg 24186328  T
Q  201 taaaattggtgttttggtgacgggtgatgatgt 233  Q
    ||||||||||||||||||||| |||| ||||||    
T  24186327 taaaattggtgttttggtgacaggtgttgatgt 24186295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 39176337 - 39176283
Alignment:
Q  5 tgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaa 59  Q
    ||||||||||||||||||||| | |  |||||||||| |||||||||||||||||    
T  39176337 tgtttgatttttgtttctgaaatataatgttttcatgctaaattcgtgatttaaa 39176283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 16216418 - 16216195
Alignment:
Q  1 tatatgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatataagaaaaagtgag 100  Q
    ||||||||||||||| ||||| |||||||| |||||||||||||||||||| ||| ||||||||| ||  ||| ||||| |||| ||||||| || ||||    
T  16216418 tatatgtttgattttcgtttcagaattgtgatgttttcatgttaaattcgtcattgaaatatgattatgttgtgctttgcaatacataagaagaaatgag 16216319  T
Q  101 taaaaatcatggaactggagatatagaatgagattttaaggtgttggtgtgttaatgagaattgatcatataaaaaattaatgttaatggataaatggtg 200  Q
    |||||| ||||||| | ||| ||||||||||| ||||||||||||||||||||||||| |||| |||||||   ||||| ||||||||||||||||||||    
T  16216318 taaaaaccatggaattagaggtatagaatgaggttttaaggtgttggtgtgttaatgataattaatcatat--gaaattgatgttaatggataaatggtg 16216221  T
Q  201 taaaattggtgttttggtgacgggtg 226  Q
    ||||||||||||||||||||||||||    
T  16216220 taaaattggtgttttggtgacgggtg 16216195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 13921194 - 13921002
Alignment:
Q  1 tatatgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatataagaaaaagtgag 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||  ||| |||||||||||||||||  || ||||    
T  13921194 tatatgtttgatttttgtttctgaattgtgttgttttaatgttaaatttgtgatttaaatatgacgatgttgtgctttggaatatataagatcaaatgag 13921095  T
Q  101 taaaaatcatggaactggagatatagaatgagattttaaggtgttggtgtgttaatgagaattgatcatataaaaaattaatgttaatggataaa 195  Q
    |||||| ||||||| | ||| |||||||| |  || ||  |||||||||| |||||||||| | || |||| |||||||||||||||||||||||    
T  13921094 taaaaaccatggaattagaggtatagaataatgttcta--gtgttggtgtcttaatgagaaataattatatgaaaaattaatgttaatggataaa 13921002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 20906031 - 20905856
Alignment:
Q  1 tatatgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatataagaaaaagtgag 100  Q
    ||||||||||||||  |||| ||||||||| |||||||| |||||||| || ||| |||||| |||||| ||  |||||||||| || ||   |||||||    
T  20906031 tatatgtttgatttccgtttttgaattgtgatgttttcaggttaaattggttattgaaatataatgattttgagctttggaatacatcag---aagtgag 20905935  T
Q  101 taaaaatcatggaactggagatatagaatgagattttaaggtgttggtgtgttaatgagaattgatcatataaaaaatt 179  Q
    |||||| ||| ||| | ||| ||||||||||| |||||||  |||||||||||||| | |||| ||||||  |||||||    
T  20905934 taaaaaccatagaattagaggtatagaatgaggttttaagacgttggtgtgttaattacaattaatcatacgaaaaatt 20905856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 32 - 226
Target Start/End: Original strand, 11917218 - 11917409
Alignment:
Q  32 tgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatataagaaaaagtgagtaaaaatcatggaactggagatatagaatga 131  Q
    |||||||||||||||||| ||||||||||||||||||  | | ||||||||||||||||||   ||||||||||| ||||||| ||||| ||||  ||||    
T  11917218 tgttttcatgttaaattcatgatttaaatatgatgatgttctgctttggaatatataagaa---gtgagtaaaaaccatggaaatggaggtatatgatga 11917314  T
Q  132 gattttaaggtgttggtgtgttaatgagaattgatcatataaaaaattaatgttaatggataaatggtgtaaaattggtgttttggtgacgggtg 226  Q
    | | |||||||||||||||||||||||||||| ||||||| || || |||| |||||||||||||||||||||||| |||||||||||| |||||    
T  11917315 ggtcttaaggtgttggtgtgttaatgagaattaatcatatgaacaagtaatcttaatggataaatggtgtaaaattagtgttttggtgatgggtg 11917409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 40 - 220
Target Start/End: Original strand, 23221865 - 23222045
Alignment:
Q  40 tgttaaattcgtgatttaaatatgatgattctgttctttggaatatataagaaaaagtgagtaaaaatcatggaactggagatatagaatgagattttaa 139  Q
    |||||||||||||||  ||||||||||||  ||| ||||| |||||| ||||||| | ||||||||| |||| || | |||  |||  |||| |||||||    
T  23221865 tgttaaattcgtgatggaaatatgatgatgttgtgctttgaaatatagaagaaaaggcgagtaaaaaccatgaaattagaggcatatgatgatattttaa 23221964  T
Q  140 ggtgttggtgtgttaatgagaattgatcatataaaaaattaatgttaatggataaatggtgtaaaattggtgttttggtga 220  Q
    | |||||||||||||||||||||| ||||||| ||||||| |||||||||| |||||||| |||||||| |||||||||||    
T  23221965 gttgttggtgtgttaatgagaattaatcatatgaaaaattgatgttaatgggtaaatggtctaaaattgttgttttggtga 23222045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 10058398 - 10058287
Alignment:
Q  2 atatgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatataagaaaaagtgagt 101  Q
    |||||||| ||||| |||||||||||||| |||||||||||| ||||| ||||| ||||||| | | | | || ||| ||| ||||||| ||||||||||    
T  10058398 atatgtttaattttcgtttctgaattgtggtgttttcatgttgaattcatgattaaaatatggtta-tgttttgttttgaacatataagtaaaagtgagt 10058300  T
Q  102 aaaaatcatggaa 114  Q
    |||||||||||||    
T  10058299 aaaaatcatggaa 10058287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 18147802 - 18147856
Alignment:
Q  5 tgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaa 59  Q
    ||||||||||||||||||||| | |  |||||||||| |||||| ||||||||||    
T  18147802 tgtttgatttttgtttctgaaatataatgttttcatgctaaatttgtgatttaaa 18147856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 11508913 - 11508966
Alignment:
Q  10 gatttttgtttctgaa-ttgtgttgttttcatgttaaattcgtgatttaaatat 62  Q
    ||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||    
T  11508913 gatttttgtttctaaagttgtgatgttttcatgttaaatttgtgattgaaatat 11508966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 31215866 - 31216003
Alignment:
Q  1 tatatgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatataagaaaaagtgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  | ||||||||||||||| |||||||    
T  31215866 tatatgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgatgttgtgatgtggaatatataagaagaagtgag 31215965  T
Q  101 taaaaatcatggaactggagatatagaatgagatttta 138  Q
    |||||||||||| | | ||| ||||||||||| |||||    
T  31215966 taaaaatcatggtattagaggtatagaatgaggtttta 31216003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 6875222 - 6875410
Alignment:
Q  1 tatatgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatataagaaaaagtgag 100  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||  |||||||| |||| |||||||| ||||||     
T  6875222 tatatgtttgattttcgtttctgaattgtgttggtttcatgttaaatttgtgatttaaatatgatgatgttgttcttttgaatgtataagaagaagtgat 6875321  T
Q  101 taaaaatcatggaactggagatatagaatgagattttaaggtgttggtgtgttaatgagaattgatcatataaaaaattaatgttaatgg 190  Q
    | |||| ||   || | ||| ||| ||||| | ||||||||||||| ||||||||||||| || ||||||| ||||| ||||||||||||    
T  6875322 tgaaaaccacataattagaggtatggaatgtggttttaaggtgttgatgtgttaatgagatttaatcatatgaaaaa-taatgttaatgg 6875410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 6880738 - 6880851
Alignment:
Q  1 tatatgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatataagaaaaagtgag 100  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||  ||| |||| ||||||||||||| ||||||     
T  6880738 tatatgtttgattttcgtttctgaattgtgttgttttcatattaaatttgtgatttaaatatgatgatggtgtgcttttgaatatataagaagaagtgac 6880837  T
Q  101 taaaaatcatggaa 114  Q
    ||||||||| ||||    
T  6880838 taaaaatcaaggaa 6880851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 6880852 - 6880905
Alignment:
Q  142 tgttggtgtgttaatgagaattgatcatataaaaaattaatgttaatggataaa 195  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||    
T  6880852 tgttgatgtgttaatgagaattaatcatatgaaaaattaatgttaatgggtaaa 6880905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 32624546 - 32624626
Alignment:
Q  8 ttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatata 88  Q
    ||||||||||||||| ||||||| ||||||    |||||||| ||||| ||||||||||||  ||| |||| |||||||||    
T  32624546 ttgatttttgtttctaaattgtgatgttttttgtttaaattcctgattgaaatatgatgatgttgtgctttagaatatata 32624626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27538065 - 27538128
Alignment:
Q  1 tatatgtttgatttttgttt-ctgaattgtgttgttttcatgttaaattcgtgatttaaatatg 63  Q
    ||||| |||||||||||||| ||||| |||  |||| ||||||||||||||||||| |||||||    
T  27538065 tatatatttgatttttgttttctgaactgttatgttgtcatgttaaattcgtgattgaaatatg 27538128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 31595445 - 31595341
Alignment:
Q  1 tatatgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatataagaaaaagtgag 100  Q
    ||||||||||||||| |||| |||||||||||||||| ||| ||||||||||||||||||||||||||  |||  |||| ||||||| |||| |||||||    
T  31595445 tatatgtttgattttagttt-tgaattgtgttgttttaatgataaattcgtgatttaaatatgatgatgttgtgttttgtaatatattagaagaagtgag 31595347  T
Q  101 taaaaa 106  Q
    ||||||    
T  31595346 taaaaa 31595341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 22911000 - 22911103
Alignment:
Q  1 tatatgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatataagaaaaagtgag 100  Q
    |||||||||||||||  ||| |||||| ||||||||| ||||||||||| |||||||||||||||| |  ||| |||||||||||||||||| |||||||    
T  22911000 tatatgtttgattttaattt-tgaattatgttgttttaatgttaaattcatgatttaaatatgatgttgttgtgctttggaatatataagaagaagtgag 22911098  T
Q  101 taaaa 105  Q
    |||||    
T  22911099 taaaa 22911103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 22967522 - 22967419
Alignment:
Q  1 tatatgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatataagaaaaagtgag 100  Q
    |||||||||||||||  ||| |||||| ||||||||| ||||||||||| |||||||||||||||| |  ||| |||||||||||||||||| |||||||    
T  22967522 tatatgtttgattttaattt-tgaattatgttgttttaatgttaaattcatgatttaaatatgatgttgttgtgctttggaatatataagaagaagtgag 22967424  T
Q  101 taaaa 105  Q
    |||||    
T  22967423 taaaa 22967419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 31595034 - 31594945
Alignment:
Q  1 tatatgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatataaga 91  Q
    ||||||||| ||||| |||| |||||||||||||||| ||||||||||| ||||||||||||||||||  ||| |||||||||||||||||    
T  31595034 tatatgtttaattttagttt-tgaattgtgttgttttaatgttaaattcatgatttaaatatgatgatgttgtgctttggaatatataaga 31594945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 22224973 - 22224879
Alignment:
Q  17 gtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatataagaaaaagtgagtaaaaatcatg 111  Q
    |||||| ||||||| |||||||||||| ||||||||||| || |||| | ||  |||  ||||||| ||||||| ||||||||||||||| ||||    
T  22224973 gtttctaaattgtgatgttttcatgttgaattcgtgattgaattatggttatgttgtgttttggaagatataagcaaaagtgagtaaaaaccatg 22224879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 31597597 - 31597496
Alignment:
Q  13 ttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatgatgattctgttctttggaatatataagaaaaagtgagtaaaaatcatgg 112  Q
    ||||| ||||||||||||||||||| || || | ||| |||||| |||||||  ||  | | ||||| |||||||||||| |||||| |||||| |||||    
T  31597597 ttttgcttctgaattgtgttgttttgatcttgacttcatgattttaatatgacaatgttttgctttgaaatatataagaagaagtgattaaaaaccatgg 31597498  T
Q  113 aa 114  Q
    ||    
T  31597497 aa 31597496  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 19769227 - 19769281
Alignment:
Q  5 tgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaa 59  Q
    ||||||||||||||||||||| | |  |||||||||| |||||||||||||||||    
T  19769227 tgtttgatttttgtttctgaaatataatgttttcatgctaaattcgtgatttaaa 19769281  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26278889 - 26278827
Alignment:
Q  1 tatatgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaatatg 63  Q
    |||||||||||||||||||| ||||||||| |||||| || |||| ||| ||||| |||||||    
T  26278889 tatatgtttgatttttgtttttgaattgtgatgtttttattttaatttcatgattgaaatatg 26278827  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 12786128 - 12786074
Alignment:
Q  5 tgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtgatttaaa 59  Q
    ||||||||||||||||||||| | |  |||||||||| |||||||||||||||||    
T  12786128 tgtttgatttttgtttctgaaatataatgttttcatgctaaattcgtgatttaaa 12786074  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 22049707 - 22049655
Alignment:
Q  1 tatatgtttgatttttgtttctgaattgtgttgttttcatgttaaattcgtga 53  Q
    ||||||||  |||||||||| | ||||||| || |||||||||||||||||||    
T  22049707 tatatgttgaatttttgtttattaattgtgatgatttcatgttaaattcgtga 22049655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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