View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0674_high_1 (Length: 568)
Name: NF0674_high_1
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 121 - 556
Target Start/End: Complemental strand, 30742063 - 30741627
Alignment:
| Q |
121 |
tgccaacaaatgctagtattaactcgagacaatgagtgcatctcttgagtaataccacacatttcctctatttcaaccgacgacaacaaatcatcttcac |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30742063 |
tgccaacaaatgctagtattaactcgagacaatgagtgcatctcttgagtaataccacacatttcctctatttcaaccgacgacaacaaatcatcttcac |
30741964 |
T |
|
| Q |
221 |
ctctgccatctaaccaagataaccgagcttttaaagaatcaagcttttatggaatattattagaatgagacaaatgccattccttcaaagccannnnnnn |
320 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30741963 |
ctctgccatctaaccaagataaccgagcttttaaagaatcaagcttttatggaatattattagaatgagacaaatgccattccttcaaagccatttttta |
30741864 |
T |
|
| Q |
321 |
na-atcaatttaagcttctccttaagtacatagccgccccatccatcaacattaaaatatttccacttatcaaacgaaaactgattataacccgacatgt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |
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| T |
30741863 |
tttatcaatttaagcttctccttaagtacatagccgccccacccatcaacattaaaatatttccacttatcaaacgaaaattgattataacctgacctgt |
30741764 |
T |
|
| Q |
420 |
cttgccaacacttcaacattcgagagggacacgtgccacaattatcatccacagactactgtaacaggcaatgatcagaaacaccacaaagaagaccaat |
519 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
30741763 |
cttgccaacacttcaacattcgagagggacacgtgccacaattatcatccacagacaactgtaataggcaatgatcagaaacaccacaaagaagagcaat |
30741664 |
T |
|
| Q |
520 |
ctggagacaattaggccatcgtaaacatcactcttca |
556 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |
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| T |
30741663 |
cttgagacaattaggccatcgtaaacatcactcttca |
30741627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 121 - 390
Target Start/End: Complemental strand, 17109701 - 17109436
Alignment:
| Q |
121 |
tgccaacaaatgctagtattaactcgagacaatgagtgcatctcttgagtaataccacacatttcctctatttcaaccgacgacaacaaatcatcttcac |
220 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||| ||||| | ||| ||||||| ||||||||||| ||||||| ||||||| ||||||||| | |
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| T |
17109701 |
tgccaacaaattatagtattaacacgagacaatgagtgaatctcattagtgataccacgtatttcctctatatcaaccggagacaacagatcatcttccc |
17109602 |
T |
|
| Q |
221 |
ctctgccatctaaccaagataaccgagcttttaaagaatcaagcttttatggaatattattagaatgagacaaatgccattccttcaaagccannnnnnn |
320 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | |||||||| || || |
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| T |
17109601 |
ctctaccatctaaccaagataaccgagcttttaaagaatcaagctttgatggaatattattagaatgagataaaggtcattcctttaacgc----ggctt |
17109506 |
T |
|
| Q |
321 |
naatcaatttaagcttctccttaagtacatagccgccccatccatcaacattaaaatatttccacttatc |
390 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| || || |||||| |||| |||||||||||| |
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|
| T |
17109505 |
ttatcaatttaagcttctccttaagaacataaccgcctcacccttcaacaataaacactttccacttatc |
17109436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 121 - 449
Target Start/End: Complemental strand, 23052904 - 23052580
Alignment:
| Q |
121 |
tgccaacaaatgctagtattaactcgagacaatgagtgcatctcttgagtaataccacacatttcctctatttcaaccgacgacaacaaatcatcttcac |
220 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||| | |||| | || ||||||||||||||| || || || ||| |||||| |||||| | | |
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| T |
23052904 |
tgccaactaatgctagtagtaacacgagacaatgaataaatctaataagaaataccacacatttcatcaatctcttccgcagacaactcctcatctcccc |
23052805 |
T |
|
| Q |
221 |
ctctgccatctaaccaagataaccgagcttttaaagaatcaagcttttatggaatattattagaatgagacaaatgccattccttcaaagccannnnnnn |
320 |
Q |
| |
|
| || |||| | | | ||||| ||||| |||| ||||||||||||| ||||||||| | ||||||||||||| ||||| || | ||||| |
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| T |
23052804 |
ccttgtcatcaagctaggataaacgagcctttagagaatcaagctttgctggaatatttgaataatgagacaaatgtcattcttttagagccactttt-- |
23052707 |
T |
|
| Q |
321 |
naatcaatttaagcttctccttaagtacatagccgccccatccatcaacattaaaatatttccacttatcaaacgaaaactgattataacccgacatgtc |
420 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||||||||| ||| |||| | ||||| ||||| || |||||| |||||||| | ||| || |
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|
| T |
23052706 |
--atcaatttaagcttctccttaagaacgtaaccgccccatccatctacagaaaaagaattccatttatctaaaacaaactgcttataaccaggcatctc |
23052609 |
T |
|
| Q |
421 |
ttgccaacacttcaacattcgagagggac |
449 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
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|
| T |
23052608 |
ttgccaacacttcaacattcgagacggac |
23052580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 464 - 552
Target Start/End: Complemental strand, 43658563 - 43658475
Alignment:
| Q |
464 |
tcatccacagactactgtaacaggcaatgatcagaaacaccacaaagaagaccaatctggagacaattaggccatcgtaaacatcactc |
552 |
Q |
| |
|
|||||||| ||| |||| | | |||||||||| ||||| |||||||||||||||||||| |||| ||||||||||| ||| || ||||| |
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|
| T |
43658563 |
tcatccactgacaactgaagcgggcaatgatcggaaaccccacaaagaagaccaatctgaagactattaggccatcttaagcaccactc |
43658475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 121 - 307
Target Start/End: Complemental strand, 17585142 - 17584958
Alignment:
| Q |
121 |
tgccaacaaatgctagtattaactcgagacaatgagtgcatctcttgagtaataccacacatttcctctatttcaaccgacgacaacaaatcatcttcac |
220 |
Q |
| |
|
||||| ||||||||| ||||||| ||||| || || || | ||| |||||||||| || |||||||||||| ||||| |||||| |||||||| | |
|
|
| T |
17585142 |
tgccagcaaatgctaatattaacacgagataaagaatgaagctcatgagtaatac-acgcatttcctctatctcaacttctgacaacttgtcatcttccc |
17585044 |
T |
|
| Q |
221 |
ctctgccatctaaccaagataaccgagcttttaaagaatcaagcttttatggaatattattagaatgagacaaatgccattccttca |
307 |
Q |
| |
|
| |||| || ||| || ||||||||| ||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||| |
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|
| T |
17585043 |
ttttgccgtccaactcagttaaccgagcctttaaagaatcaagcttagctggaatatt-ttggaatgagacaaatgccactccttca |
17584958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 17256700 - 17256773
Alignment:
| Q |
238 |
gataaccgagcttttaaagaatcaagcttttatggaatattattagaatgagacaaatgccattccttcaaagc |
311 |
Q |
| |
|
|||| |||||||||||||||||||| |||| |||||||| |||| |||| |||||||| ||||||||||| |
|
|
| T |
17256700 |
gatagccgagcttttaaagaatcaatctttccaggaatatttttagcatgaattaaatgccagtccttcaaagc |
17256773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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