View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0674_high_17 (Length: 310)

Name: NF0674_high_17
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0674_high_17
NF0674_high_17
[»] chr3 (2 HSPs)
chr3 (68-233)||(13219260-13219425)
chr3 (174-233)||(13217036-13217095)
[»] scaffold0002 (2 HSPs)
scaffold0002 (69-229)||(238285-238445)
scaffold0002 (162-229)||(240602-240669)
[»] chr4 (1 HSPs)
chr4 (138-233)||(18176963-18177058)
[»] chr5 (1 HSPs)
chr5 (174-233)||(39047942-39048001)
[»] chr7 (1 HSPs)
chr7 (142-230)||(14541323-14541411)
[»] scaffold0380 (1 HSPs)
scaffold0380 (174-233)||(15664-15723)
[»] chr1 (1 HSPs)
chr1 (188-233)||(39386263-39386308)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 68 - 233
Target Start/End: Complemental strand, 13219425 - 13219260
Alignment:
Q  68 tgaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaata 167  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13219425 tgaattattgattgtgtcataaagacccttatgtccacggcccaatctaccccccggaggaatatgtgcttctaaaatatcttttatactgtgcccaata 13219326  T
Q  168 ccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219325 ccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 13219260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 13217095 - 13217036
Alignment:
Q  174 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 233  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13217095 ttagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 13217036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 69 - 229
Target Start/End: Original strand, 238285 - 238445
Alignment:
Q  69 gaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaatac 168  Q
    ||||| ||||||||||||||||| |||||||| |||||||| |||| ||||||||||||| |||| ||||||||||  ||||| |||||||||||||| |    
T  238285 gaattgttgattgtgtcataaaggcccttatgcccacgccctaatcgaccccccggaggagtatgcgcttctaaaagatctttaatactgtgcccaattc 238384  T
Q  169 cgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg 229  Q
    |||||||||||| |||||| ||||| ||||||||||||| || ||||||||||||||||||    
T  238385 cgaagttagttcgatacatgtgaccggcaatgagaaaaataaatgcaatagctaaatgatg 238445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 240602 - 240669
Alignment:
Q  162 ccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg 229  Q
    ||||||||  |||| || |||||||||||||| || || || |||||||| |||||||||||||||||    
T  240602 ccaataccccagttggtcctatacatatgacctgcgattaggaaaagaatagcaatagctaaatgatg 240669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 18176963 - 18177058
Alignment:
Q  138 tctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 233  Q
    |||||||| ||| ||||||  || ||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18176963 tctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 18177058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 39048001 - 39047942
Alignment:
Q  174 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 233  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  39048001 ttagttctatacatatgaccggtaatgagaaaaagaattgcaatagctaaatgatgatgt 39047942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 14541323 - 14541411
Alignment:
Q  142 aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatga 230  Q
    |||| ||||||||||  || |||||| |  |||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  14541323 aaatatcttttataccatgaccaatatcccagttagttttatacatatgaccgacaatgagaaaaagaattgcaatagcaaaatgatga 14541411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 15723 - 15664
Alignment:
Q  174 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 233  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  15723 ttagttctatacatatgactggcaatgtgaaaaagaattgcaatagctagatgatgatgt 15664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 39386308 - 39386263
Alignment:
Q  188 atgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 233  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||    
T  39386308 atgaccggcaatgcgaaaaagaattacaatagctaaatgatgatgt 39386263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1567 times since January 2019
Visitors: 4422