View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0674_high_23 (Length: 250)

Name: NF0674_high_23
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0674_high_23
NF0674_high_23
[»] chr1 (2 HSPs)
chr1 (11-234)||(21809978-21810201)
chr1 (17-106)||(41346876-41346965)
[»] scaffold0265 (1 HSPs)
scaffold0265 (11-234)||(22608-22831)
[»] chr4 (1 HSPs)
chr4 (11-234)||(1927694-1927917)
[»] scaffold0012 (1 HSPs)
scaffold0012 (15-234)||(58746-58965)
[»] chr5 (1 HSPs)
chr5 (15-234)||(21880889-21881108)
[»] scaffold0029 (1 HSPs)
scaffold0029 (11-234)||(127699-127922)
[»] scaffold0002 (1 HSPs)
scaffold0002 (11-234)||(305516-305739)
[»] scaffold0093 (1 HSPs)
scaffold0093 (11-226)||(12849-13064)
[»] chr2 (4 HSPs)
chr2 (45-169)||(20383533-20383657)
chr2 (14-178)||(33237090-33237254)
chr2 (12-217)||(32297353-32297558)
chr2 (27-219)||(25974055-25974247)
[»] scaffold0125 (2 HSPs)
scaffold0125 (18-107)||(38098-38187)
scaffold0125 (18-99)||(26563-26644)
[»] chr3 (1 HSPs)
chr3 (18-107)||(14677239-14677328)
[»] chr7 (1 HSPs)
chr7 (27-142)||(20939856-20939971)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 21810201 - 21809978
Alignment:
11 cagagaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagta 110  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
21810201 cagagaaggaatggtttcatccaccaaagtattctgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagca 21810102  T
111 gtgggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggt 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
21810101 gtgggatcagttatgacattatcaccatcctgtaaaagagagatagattttgtcgttgctcggattttggagaccttatggaaataggcagtgttgcggt 21810002  T
211 caccactaagaaactgatgatgtc 234  Q
    ||||||||||||||||||| ||||    
21810001 caccactaagaaactgatggtgtc 21809978  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 41346876 - 41346965
Alignment:
17 aggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctat 106  Q
    |||||| |||||||| |||||  |||| |  ||||| || ||||||| |||||| ||  | |||||||||||||||||||||| ||||||    
41346876 aggaattgtttcatcaaccaacatattctatgcacagttattatccacgctaaaaatagcttgaaaataagaaagaatatgcatctctat 41346965  T

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Target: scaffold0265 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 22608 - 22831
Alignment:
11 cagagaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagta 110  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
22608 cagagaaggaatggtttcatccaccaaagtattctgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagca 22707  T
111 gtgggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggt 210  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
22708 gtgggatcagttatgacattatcaccatcctgtaaaagagaaatagattttgtcgatgctcggattttggagaccttatggaaataggcagtgttgcggt 22807  T
211 caccactaagaaactgatgatgtc 234  Q
    ||||||||||||||||||| ||||    
22808 caccactaagaaactgatggtgtc 22831  T

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Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 1927694 - 1927917
Alignment:
11 cagagaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagta 110  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
1927694 cagagaaggaatggtttcatccaccaaagtattctgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagca 1927793  T
111 gtgggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggt 210  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
1927794 gtgggatcagttatgacattatcaccatcctgtaaaagagaaatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcgat 1927893  T
211 caccactaagaaactgatgatgtc 234  Q
    ||||||||||||||||||| ||||    
1927894 caccactaagaaactgatggtgtc 1927917  T

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Target: scaffold0012 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 58746 - 58965
Alignment:
15 gaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagtagtgg 114  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
58746 gaaggaatggtttcatccaccatagtattctgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagcagtgg 58845  T
115 gatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggtcacc 214  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
58846 gatcagttatgacattatcaccatcctgtaaaagagaaatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggtcacc 58945  T
215 actaagaaactgatgatgtc 234  Q
    ||||||||||||||| ||||    
58946 actaagaaactgatggtgtc 58965  T

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Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 21880889 - 21881108
Alignment:
15 gaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagtagtgg 114  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
21880889 gaaggaatggtttcatccaccatagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagcagtgg 21880988  T
115 gatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggtcacc 214  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||    
21880989 gatcagttatgacattatcaccatcctgtaaaagagaaatagattttgtcgctgctcgaattttggagaccttatggaaataggcagtgttgagatcacc 21881088  T
215 actaagaaactgatgatgtc 234  Q
    ||||||||||||||| ||||    
21881089 actaagaaactgatggtgtc 21881108  T

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Target: scaffold0029 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 127922 - 127699
Alignment:
11 cagagaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagta 110  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
127922 cagagaaggaatggtttcatccaccaaagtattctgagtacaattgttatccatgctaaaaatttcctgaaaataagaaagaatatgcaactctatagca 127823  T
111 gtgggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggt 210  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||  |||||||||||| ||||||||||||||||||||||||    
127822 gtgggatcagttatgacattatcaccatcctgtaaaagagaaatagattttgtcgatgctccaattttggagaccctatggaaataggcagtgttgcggt 127723  T
211 caccactaagaaactgatgatgtc 234  Q
    |||   | ||||||||||| ||||    
127722 cacacttgagaaactgatggtgtc 127699  T

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Target: scaffold0002 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 305739 - 305516
Alignment:
11 cagagaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagta 110  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
305739 cagagaaggaatggtttcatccaccaaagtattctgagtacaattgttatccatgctaaaaatttcctgaaaataagaaagaatatgcaactctatagca 305640  T
111 gtgggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggt 210  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||  |||||||||||| ||||||||||||||||||||||||    
305639 gtgggatcagttatgacattatcaccatcctgtaaaagagaaatagattttgtcgatgctccaattttggagaccctatggaaataggcagtgttgcggt 305540  T
211 caccactaagaaactgatgatgtc 234  Q
    |||   | ||||||||||| ||||    
305539 cacacttgagaaactgatggtgtc 305516  T

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Target: scaffold0093 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 13064 - 12849
Alignment:
11 cagagaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagta 110  Q
    ||||||||||||| |||||||||||| |||||| |||||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| |    
13064 cagagaaggaatgttttcatccaccatagtattttgagcacagttgttgtccatgttaaaaatttcctgaaaataagaaagaatatgcaactctatagca 12965  T
111 gtgggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggt 210  Q
    ||||||||||| |  ||||||||||||||| |||||||||| ||||| |||||||||||||||||||  |||||| |||| |||||||||||||||||||    
12964 gtgggatcagtgataacattatcaccatccagtaaaagagaaatagactttgtcgctgctcggatttgagagaccctatgaaaataggcagtgttgcggt 12865  T
211 caccactaagaaactg 226  Q
    ||||||||||||||||    
12864 caccactaagaaactg 12849  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 20383657 - 20383533
Alignment:
45 tgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagtagtgggatcagttaagacattatcaccatcctgta 144  Q
    |||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||| | |||||||||||| |  |||||||| ||||||||||    
20383657 tgagcacagttgttgtccatgctaaaaattgcctgaaaataagaaagaatatgcaattctattgcagtgggatcagtaataacattatccccatcctgta 20383558  T
145 aaagagagatagattttgtcgctgc 169  Q
    ||| ||| |||| ||||||| ||||    
20383557 aaaaagaaatagtttttgtcactgc 20383533  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 33237090 - 33237254
Alignment:
14 agaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagtagtg 113  Q
    ||||||||| |||||||| |||| |||||| ||| |||||||||||||||||||||||| | ||||||||||||| ||||||| |  |||||||   |||    
33237090 agaaggaattgtttcatctaccagagtattctgaacacaattgttatccatgctaaagagtgcctgaaaataagagagaatattcgtctctatatctgtg 33237189  T
114 ggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggatttt 178  Q
    |||||||  |  ||||| ||||||||||| || | ||| || ||||| || ||||| ||||||||    
33237190 ggatcagagataacattgtcaccatcctgcaagaaagaaatcgatttggttgctgcccggatttt 33237254  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 32297558 - 32297353
Alignment:
12 agagaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagtag 111  Q
    ||||| ||||| |||||||| ||||||||||| || | |||||| || |||||||| || ||| ||||||||||||| ||||||||||| | |||||| |    
32297558 agagagggaattgtttcatcaaccaaagtattttgtgtacaattattttccatgctgaatattgcctgaaaataagagagaatatgcaattatatagttg 32297459  T
112 tgggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggtc 211  Q
    || | | ||| |  | ||| || ||||||| | ||| ||| ||||||||||| ||||| |||||||| || |   |||| ||||| |||||||| |||||    
32297458 tgtgtttagtaataatattgtctccatcctcttaaaaagaaatagattttgttgctgcccggattttagaaattctatgaaaataagcagtgttacggtc 32297359  T
212 accact 217  Q
     |||||    
32297358 tccact 32297353  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 25974055 - 25974247
Alignment:
27 tcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagtagtgggatcagttaaga 126  Q
    ||||||||||| ||||| ||| |||| || ||||||||| |||| ||  | |||||||||||||||||||||| ||| |||    |||||||||| |  |    
25974055 tcatccaccaacgtattttgaacacagttattatccatggtaaaaataccttgaaaataagaaagaatatgcatctcaatatccatgggatcagtaagaa 25974154  T
127 cattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggtcaccactaa 219  Q
    |||| ||||||||||| |  | ||| ||||| || || ||||| |||||||| || ||| | || || || |||||||| ||||| |||||||    
25974155 cattttcaccatcctgcagtaaagaaatagagttggtggctgcccggattttagacaccctgtgaaagtaagcagtgttacggtccccactaa 25974247  T

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Target: scaffold0125 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 38098 - 38187
Alignment:
18 ggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctata 107  Q
    |||||||| |||||||| |||||||| ||| |||| || ||||||||||| || ||  ||||||| ||||| ||||||||||||||||||    
38098 ggaatggtctcatccactaaagtattttgaccacagttattatccatgctgaaaataccctgaaagtaagatagaatatgcaactctata 38187  T

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Target: scaffold0125; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 26563 - 26644
Alignment:
18 ggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgca 99  Q
    |||||||| |||||||| || ||||| ||| ||||||| ||||||||||| || ||  ||||||| ||||| ||||||||||    
26563 ggaatggtctcatccactaatgtattctgaccacaattattatccatgctgaaaataccctgaaagtaagatagaatatgca 26644  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 14677239 - 14677328
Alignment:
18 ggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctata 107  Q
    |||||| | |||||||| |||||||| ||| |||| || ||||||||||| || ||  ||||||| ||||| ||||||||||||||||||    
14677239 ggaatgatctcatccactaaagtattctgaccacagttattatccatgctgaaaataccctgaaagtaagatagaatatgcaactctata 14677328  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 20939856 - 20939971
Alignment:
27 tcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagtagtgggatcagttaaga 126  Q
    ||||||||||| ||||| ||| |||| || ||||||||| |||| ||  | |||||||||||||||||||||| ||| |||    |||||||||| |  |    
20939856 tcatccaccaatgtattttgaacacagttattatccatggtaaaaataccttgaaaataagaaagaatatgcatctcaatatccatgggatcagtaagaa 20939955  T
127 cattatcaccatcctg 142  Q
    |||| |||||||||||    
20939956 cattgtcaccatcctg 20939971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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