View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0674_high_28 (Length: 228)

Name: NF0674_high_28
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0674_high_28
NF0674_high_28
[»] chr3 (1 HSPs)
chr3 (1-130)||(55088009-55088138)
[»] chr4 (12 HSPs)
chr4 (40-122)||(27600645-27600727)
chr4 (33-88)||(27495621-27495676)
chr4 (1-88)||(27524577-27524664)
chr4 (1-77)||(27423275-27423351)
chr4 (57-88)||(27557598-27557629)
chr4 (1-87)||(27508905-27508991)
chr4 (34-88)||(27577404-27577458)
chr4 (10-83)||(27490022-27490095)
chr4 (56-88)||(27466929-27466961)
chr4 (56-92)||(27487091-27487127)
chr4 (56-88)||(27513776-27513808)
chr4 (41-89)||(27595478-27595526)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 55088138 - 55088009
Alignment:
Q  1 aaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcactattccatgcaaagaggaggctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  55088138 aaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcactattccatgcaaagaagaggctt 55088039  T
Q  101 ttattaatcttacctctcaactgcacgcct 130  Q
    ||||||||||||||||||||||||||||||    
T  55088038 ttattaatcttacctctcaactgcacgcct 55088009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 27600645 - 27600727
Alignment:
Q  40 gaagagtttggtttcaatcatccaatgggtggtctcactattccatgcaaagaggaggcttttattaatcttacctctcaact 122  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||| |||||||| || || || || |||||||||||||||||    
T  27600645 gaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatgcattcatcaatcttacctctcaact 27600727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 27495621 - 27495676
Alignment:
Q  33 agctgaggaagagtttggtttcaatcatccaatgggtggtctcactattccatgca 88  Q
    |||||| ||||||||||| || ||||||||||||||||||||||| ||||| ||||    
T  27495621 agctgaagaagagtttggatttaatcatccaatgggtggtctcaccattccttgca 27495676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 27524577 - 27524664
Alignment:
Q  1 aaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcactattccatgca 88  Q
    ||||| ||||||||||  || ||||| |||| |||||||||||||||||| |   |||||||||||||||| ||||| ||||| ||||    
T  27524577 aaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccgtgca 27524664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 27423275 - 27423351
Alignment:
Q  1 aaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcac 77  Q
    ||||| ||||||||||  || ||||| | || ||| |||||||||||||||| ||||||||| |||||||| |||||    
T  27423275 aaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcac 27423351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 88
Target Start/End: Original strand, 27557598 - 27557629
Alignment:
Q  57 tcatccaatgggtggtctcactattccatgca 88  Q
    ||||||||||||||||||||||||||||||||    
T  27557598 tcatccaatgggtggtctcactattccatgca 27557629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 27508905 - 27508991
Alignment:
Q  1 aaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcactattccatgc 87  Q
    ||||| ||||||||||  || ||||| ||||  ||||||||||||||||| |   ||||||||| |||||| ||||| |||||||||    
T  27508905 aaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattccatgc 27508991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 27577404 - 27577458
Alignment:
Q  34 gctgaggaagagtttggtttcaatcatccaatgggtggtctcactattccatgca 88  Q
    ||||| ||||| ||||| |||||||| || |||||||||||||| ||||||||||    
T  27577404 gctgaagaagaatttggattcaatcaccctatgggtggtctcacaattccatgca 27577458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 27490022 - 27490095
Alignment:
Q  10 tcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcactattcc 83  Q
    |||||||  |||||||| |||| ||| |||||||||||||| |   |||||||||||||||| ||||| |||||    
T  27490022 tcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcc 27490095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 27466929 - 27466961
Alignment:
Q  56 atcatccaatgggtggtctcactattccatgca 88  Q
    |||||||||||||||||||||||||||| ||||    
T  27466929 atcatccaatgggtggtctcactattccttgca 27466961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 27487091 - 27487127
Alignment:
Q  56 atcatccaatgggtggtctcactattccatgcaaaga 92  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  27487091 atcatccaatgggtggtcttactattccttgcaaaga 27487127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 27513808 - 27513776
Alignment:
Q  56 atcatccaatgggtggtctcactattccatgca 88  Q
    |||||||||||||||||||||||||||| ||||    
T  27513808 atcatccaatgggtggtctcactattccttgca 27513776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 27595478 - 27595526
Alignment:
Q  41 aagagtttggtttcaatcatccaatgggtggtctcactattccatgcaa 89  Q
    |||||||||| ||||||||||| ||||||||||| || ||||| |||||    
T  27595478 aagagtttggattcaatcatcccatgggtggtcttacaattccttgcaa 27595526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1696 times since January 2019
Visitors: 4429